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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS00410 [old locus tag: SPJ_0086 ]
  • pan locus tag?: PNEUPAN000701000
  • symbol: SPJ_RS00410
  • pan gene symbol?: —
  • synonym:
  • product: AAA family ATPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS00410 [old locus tag: SPJ_0086 ]
  • symbol: SPJ_RS00410
  • product: AAA family ATPase
  • replicon: chromosome
  • strand: +
  • coordinates: 68996..71383
  • length: 2388
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (68996..71383) NCBI
  • BioCyc: SPJ_RS00410 BioCyc
  • MicrobesOnline: see SPJ_0086
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    ATGTTTGAAAAAATTAAAGGAATTAATATAAAATCAGGTATTTTTGAAGATGAAACAAAA
    TTAGAACTCTTTGAAGGAAATTTTGAGGGAACAAATCCAGTACAAAACGATAGGGCAAGT
    TTATTGTTTGGAAGGAATGGTTCAGGGAAAAGTACCATTGCTCGAGGAATAAATCAATTA
    AAAAATGGTGAGATTGGAACAGATAGAGTATCATTTATTGATAAAAATAATAATAATATT
    GTACTTAGTGATACTGAACGAAAATCGATATTTGTTTTCAATGAACACTATGTTGATCAG
    AAAGTCAAAATTGCTCAAGAAGGGTTAGATACAATTGTAATTTTAGGTGAACAGGTTGAT
    ATCGATGAGGAACTGGATAGATTAAGAACGCAGTTATCAGAATCACAAATTGAATCTCAA
    GATTATTATGCTGAATATGAAGAATATTTAGATGAAAAAAATGAAAAATCTCCAGATTTT
    TGGAAAAAGGAAATGACAGATTCTTTGAAAGGAGTAGGCAACTGGGCCGAAAGAGATAGG
    GAGATAAAAGGAAATCGAGCTGCATCTCCCGTTCATAATAATACCTTTCAAAATTTTGTT
    GATTTACAACCAATCTTAGATAAAAATGAGTTAGAGGTTGAATTCAACAATAAAAAAGCT
    AGATATTTTTCAATAAGAGATTCCGCAGTTACTATAAATAATGAACTATCTTTACCTGAT
    ATTAATTTTGATAGCAATGAATTATCAACTTTATTGTCTGAAAAAATCGAAGAACCTGAG
    TTGAATTCTAGGGATAAGTATTTACTGACATTATTATCTGATTCCACAAAAGGTGAACGT
    CATTTGAGAGAAGTTAAAGATTTCTTTGAAGATGAACATCAAAAAAAATGTCCTTTCTGT
    ACTCAATCAGTATCAGAAGATGTTAAAGTTGAACTCACGAATGGCATAACTAAACTACTA
    TCAAGAGCAGTCGAAGAACACCAATCCGCATTGAGAGGTAAAAAAATTGATGAGATTAAT
    CAAGATTTTTCTGGTTATGAACAGATAGATCCAATATTAATTCAGTCTTATCAAAATAGT
    ATTAATGCTTTGAATGCTAAATTTAACGAAATTAACTCAATAATCGATAAGAAGATTGAT
    AATCCATATAATATAGTTGAGTTACCTAATATAAGCTTTTCTCAAGAATTAAGTCAAGCA
    GAGCATGATATTGAAAAAATTAACCAAGCAATTATCAAACATAATTCAGAAATCTCGGGT
    ATTCAAAAGTTAAAAGTAGATCTCCTTCAAATAAATAATGAATTAGCTTTTTATGAAATT
    CAAGATGCATACAAAAAGTTTCAAGAGAAAACAAATAAAAAAGCAATTTGTGAAAATAAT
    TATAATAACAGTAGTAAACGAGTAAAGGATTATGAGAAGCAGATTTCTGATTTAGAAGAC
    AAGAAACTTAATATAGATATTGCAGTTGATGAAATTAATAAAAGTTTAAATTACATATTT
    TTTTCAAAAAATCGGTTAGCTATACAGAATCAAAACGGAAAATACTATCTGTTATCAAGA
    GGTAAGTCTGTGGTCCCCAGTAGGGTTTCCGTAGGGGAACGAAATGCGCTGGCATTATGT
    TATTTCTTTACTGAGATAATTCAACAGAGAGAGTTAGCAGATGCTTATAGTCATGAATAT
    TTTATTGTTATTGACGATCCAATTTCTAGTTTTGATATGGAAAATAAAGTTGGAATAACC
    TCGTATTTAAAATATTGTTTAACTAGATTTTTTAAGGGGAATAGTAATACTAGAGTTTTA
    CTAATGACCCATGATAAACAAACAATATATGACTTTGATATCTTTTTGAAAGAGATAATG
    GAATCCTGTAAAGAAGAGGAAGGTGGACAAAAATCTAAATACAAGAAGTTAGAATTGGTT
    TCTGGTAAATTACAAGAATTCAAAACTAGTACTCACGATTATACAGAACTACTTGAAATA
    GTCTTCGGTTATGCATTGGGAAATAGTACACCTACTTCGGAAAGTTTTGTTGGGAATGCA
    ATGAGAAAAATTTTAGAAGCCTATGGTAGTTTTAATTATAAGAAGGGAATTGCCGAGCTA
    ACAACAGATCCTTTAATTGTTGAAAAAATTGATAAAGAATACAGAACTTATTTTGAGAAT
    CTTATGTATAGACTGGTTTTAAACGGTGAAAGTCATTTTAAGGATCCGGTTAAAACTTTG
    AGTATTGATTTCTTTGATACCATTTCTGATGAAGAACGAAAAAAAACAGCTAGAGATTTA
    CTAGTTTTGCTTTATCTTTTAGATGATTTACATGTTTTAAAACATTTAGAGGGTGTATCA
    AATGCGGAAAATAGACTTGAACAATGGAAGTGTGAGATTTTAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2388

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS00410 [old locus tag: SPJ_0086 ]
  • symbol: SPJ_RS00410
  • description: AAA family ATPase
  • length: 795
  • theoretical pI: 4.76952
  • theoretical MW: 91939.6
  • GRAVY: -0.616604

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 21.7)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 20.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 19.7)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 18.7)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 18.7)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 17.6)
    and 5 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 15.6)
    Signal transduction Regulatory functions DNA interactions transcriptional regulator NrdR (TIGR00244; HMM-score: 13.3)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 12.6)
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 12.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 5.2)
  • TheSEED: see SPJ_0086
  • PFAM:
    P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 192.1)
    and 3 more
    ABC_tran; ABC transporter (PF00005; HMM-score: 23.4)
    no clan defined WEMBL; Weak chloroplast movement under blue light (PF05701; HMM-score: 21.7)
    P-loop_NTPase (CL0023) AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 18.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.026803
    • TAT(Tat/SPI): 0.006662
    • LIPO(Sec/SPII): 0.000561
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFEKIKGINIKSGIFEDETKLELFEGNFEGTNPVQNDRASLLFGRNGSGKSTIARGINQLKNGEIGTDRVSFIDKNNNNIVLSDTERKSIFVFNEHYVDQKVKIAQEGLDTIVILGEQVDIDEELDRLRTQLSESQIESQDYYAEYEEYLDEKNEKSPDFWKKEMTDSLKGVGNWAERDREIKGNRAASPVHNNTFQNFVDLQPILDKNELEVEFNNKKARYFSIRDSAVTINNELSLPDINFDSNELSTLLSEKIEEPELNSRDKYLLTLLSDSTKGERHLREVKDFFEDEHQKKCPFCTQSVSEDVKVELTNGITKLLSRAVEEHQSALRGKKIDEINQDFSGYEQIDPILIQSYQNSINALNAKFNEINSIIDKKIDNPYNIVELPNISFSQELSQAEHDIEKINQAIIKHNSEISGIQKLKVDLLQINNELAFYEIQDAYKKFQEKTNKKAICENNYNNSSKRVKDYEKQISDLEDKKLNIDIAVDEINKSLNYIFFSKNRLAIQNQNGKYYLLSRGKSVVPSRVSVGERNALALCYFFTEIIQQRELADAYSHEYFIVIDDPISSFDMENKVGITSYLKYCLTRFFKGNSNTRVLLMTHDKQTIYDFDIFLKEIMESCKEEEGGQKSKYKKLELVSGKLQEFKTSTHDYTELLEIVFGYALGNSTPTSESFVGNAMRKILEAYGSFNYKKGIAELTTDPLIVEKIDKEYRTYFENLMYRLVLNGESHFKDPVKTLSIDFFDTISDEERKKTARDLLVLLYLLDDLHVLKHLEGVSNAENRLEQWKCEILE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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