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serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS04640 [old locus tag: SPJ_0927 ]
  • pan locus tag?: PNEUPAN001986000
  • symbol: SPJ_RS04640
  • pan gene symbol?: —
  • synonym:
  • product: DUF368 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS04640 [old locus tag: SPJ_0927 ]
  • symbol: SPJ_RS04640
  • product: DUF368 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 884988..885830
  • length: 843
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGCTCTCATGGTTAGCACGCGTTATTAAAGGGATTGTAATTGCTCTTGGATTTATCCTA
    CCGGGAATTTCCGGAGGGGTTCTAGCAGCAATCTTAGGAATCTATGAACGAATGATTGGC
    TTTCTGGCCCATCCCTTTAAAGACCTTAAAGAAAATGTTTTGTACTTTATTCCAGTTGCC
    ATCGGTATGCTTCTGGGAATCGGCTTATTTTCCTACCCGATTGAATACCTGCTTGAAAAT
    TATCAGGTCTTTGTATTATGGAGCTTTGCGGGAGCTATTATCGGTACAGTTCCTAGCCTC
    CTCAAAGAATCAACTCGAGAATCTGACCGAGACAAGATTGATTTAGCTTGGTTATGGACA
    ACCTTTATCATTTCTGGATTAGGACTATATGCCTTAAATTTTGTCGTTGGAACCTTAAGC
    GCCAGCTTTCTTAACTTCGTCCTAGCAGGCGCACTATTGGCCCTTGGCGTCTTGGTTCCT
    GGCCTCAGCCCATCGAATTTACTTTTGATTTTGGGACTCTATGCTCCTATGTTGACTGGT
    TTTAAAACTTTTGATCTCTTGGGAACCTTCTTTCCGATTGGAATTGGTGCAGGTGCAACT
    CTCATCGTTTTTTCAAAATTGATGGATTATGCCTTAAACAACTACCACTCACGCGTCTAT
    CATTTCATCATCGGTATCGTCCTATCAAGTACCCTTTTGATCTTAATTCCAAATGCAGGA
    AACGCTGAAAGTATCCAATACACAGGACTTTCACTTGTCGGTTATGTCATCATCGCCTTC
    TTCTTTGCGCTGGGAATCTGGCTTGGTATTTGGATGAGTCAATTGGAGGATAAATATAAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    843

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS04640 [old locus tag: SPJ_0927 ]
  • symbol: SPJ_RS04640
  • description: DUF368 domain-containing protein
  • length: 280
  • theoretical pI: 6.80235
  • theoretical MW: 30546.2
  • GRAVY: 0.99

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPJ_0927
  • PFAM:
    no clan defined DUF368; Domain of unknown function (DUF368) (PF04018; HMM-score: 124.2)
    and 3 more
    DUF5976; Family of unknown function (DUF5976) (PF19401; HMM-score: 13.5)
    DUF6703; Family of unknown function (DUF6703) (PF20444; HMM-score: 10.6)
    GPI2; Phosphatidylinositol N-acetylglucosaminyltransferase (PF06432; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.05563
    • TAT(Tat/SPI): 0.003568
    • LIPO(Sec/SPII): 0.032919
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLSWLARVIKGIVIALGFILPGISGGVLAAILGIYERMIGFLAHPFKDLKENVLYFIPVAIGMLLGIGLFSYPIEYLLENYQVFVLWSFAGAIIGTVPSLLKESTRESDRDKIDLAWLWTTFIISGLGLYALNFVVGTLSASFLNFVLAGALLALGVLVPGLSPSNLLLILGLYAPMLTGFKTFDLLGTFFPIGIGAGATLIVFSKLMDYALNNYHSRVYHFIIGIVLSSTLLILIPNAGNAESIQYTGLSLVGYVIIAFFFALGIWLGIWMSQLEDKYK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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