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serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS04680 [old locus tag: SPJ_0935 ]
  • pan locus tag?: PNEUPAN001994000
  • symbol: SPJ_RS04680
  • pan gene symbol?: whyD
  • synonym:
  • product: glycerophosphoryl diester phosphodiesterase membrane domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS04680 [old locus tag: SPJ_0935 ]
  • symbol: SPJ_RS04680
  • product: glycerophosphoryl diester phosphodiesterase membrane domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 891103..892866
  • length: 1764
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGAAACCTGAAAAACCTAAAAAATTGGGTCTTAAACAGATTTACCTCAATCTTGATAAA
    ATCCTCTTTCTATTTTTCTTGATTTTTATGATAGTGGAGTATTTGTGGGTACCATTCAAT
    TCATGGTTGGCTAGCTTCTTATTAGATCAGACAGGTTATCTTTTTATTTCCTATAACAAT
    GTCTTAGCCATCCTTACTCATTCTCCATTGATTAGTCTAGCTTTTTTAGCCTTGATTGTA
    ATTAACCTTCTGGTTGCTTATTTTCAAATAGGACTCCTCTTTATTGGTGCTCGTCATCTC
    CTCTATAATGAAAAGCGAAGGCTAATTGAGTATATCCGCAAGGTTTTCCATGAAAGTTTT
    GGATTTATGAAAAAGCTAACTTGCGCTAAAGCCTTGTTTATCTTTTTCTATATAGCTATG
    CTGTTTCCTTTTATACGGAAAATGCTGAAGATTTATTATCTTAATAAAATCGTCATTCCA
    GAGTTTATCCAAGCTTATTTAGAAGATAAATATTGGATGTGGTGGCTGAGCATCCTACTT
    CTATCTCTTATCTTTCTCTATGTCTCTGTCAGATTGATGTTTGCCCTTCCGAAGATTGTA
    TATGATCAGCTGACTGTTCGAGAAGCAGTGATGTTTAGCTTGGAGAAAACCAAGAAGAGA
    GTTACTTTTTATGCTTGGAATTTATTTTACATCTTGCTCAAAGCACATTTATTATTTTAT
    CTTCCTTTGATTCCTTTATTATTGGCTCAAACTTTGGTAGATGATATCACTCAGAGAGAG
    TCTCTGATTCTTGGTATTTTGAATTTTGTCGTGATTAAAAATCTCTATTATATGGCTCTG
    ACTTATTTTTTGGTTAAATTTGTTTCATTTTTGACAGGAAAGGAGCTGGATATGCTTCCT
    AGGAGAGAAAAAGATCACATCGTGCGATGGGGTGTCATGACTTGTGCCAGTCTTTTCTTT
    GCCTTAGAAGGTTATATTTATCTGGAGGCTCCCATGGTTCATCTACCTCAACTTATTTCT
    CACCGAGGGGTTTCCAATGCAAATGGGATTCAAAATACAGTAGAGTCCTTGGAAACTACA
    GCACAACTCAAACCAGATTTGGTGGAGACGGATGTGCAGGAAACAAAAGATGGGCAGTTT
    GTCATGATGCATGATGCTAACTTGAAAAATCTAGCAGGTATCAATAAAAGTCCTCAAGAC
    TTAAACTTGGAGGAGCTTAAAGGGATTGATATTTTTGAAAATGGCTACCAGACTAAAATT
    TCAAGCTTTGAAGATTATCTCAGTCGAGCCAACGAACTTGGTCAAAAATTACTAATTGAA
    ATTAAAACCAGTAAAAAAGATAGTCCAGACATGATGAACCGCTTTTTAGCCCGTTATGCT
    GCAAAGCTCAAGATTTATGGACATCAAATCCAGTCTTTAGACTACCATGTTGTCGAAAAA
    GTAAGACAGTATGATGCCGAACTGCCAGTTTATTTCATCATGCCCTACAATTCTGTCTTT
    CCTAAAACAAGAGCGACAGGATATACTATGGAGTACTCAACCTTGGATGAATATTTTGTA
    AGCAAACTATGGACAACGGATCAGAAACTTTATGTCTGGACTGTCAATGATTCAGAAGCT
    ATCAGCAAATCTCTTCACTTAGGAGTAGATGGAGTGATTACAGATGATTTGGAAAAAGTT
    CAGCGGGAAATAGAAGTAGCCCAAGAAGACCCAGAATATACGGATTTGCTCTTGAAAAAA
    GCATTGGAATTCTTTGAATTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1764

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS04680 [old locus tag: SPJ_0935 ]
  • symbol: SPJ_RS04680
  • description: glycerophosphoryl diester phosphodiesterase membrane domain-containing protein
  • length: 587
  • theoretical pI: 7.74096
  • theoretical MW: 68864.7
  • GRAVY: 0.21448

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPJ_0935
  • PFAM:
    no clan defined GPDPase_memb; Membrane domain of glycerophosphoryl diester phosphodiesterase (PF10110; HMM-score: 254.7)
    and 3 more
    PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 84.3)
    GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 30.4)
    PH (CL0266) DUF3093; Protein of unknown function (DUF3093) (PF11292; HMM-score: 6.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.33
    • Cytoplasmic Membrane Score: 9.6
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 7
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9983
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0014
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002023
    • TAT(Tat/SPI): 0.000122
    • LIPO(Sec/SPII): 0.000958
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKPEKPKKLGLKQIYLNLDKILFLFFLIFMIVEYLWVPFNSWLASFLLDQTGYLFISYNNVLAILTHSPLISLAFLALIVINLLVAYFQIGLLFIGARHLLYNEKRRLIEYIRKVFHESFGFMKKLTCAKALFIFFYIAMLFPFIRKMLKIYYLNKIVIPEFIQAYLEDKYWMWWLSILLLSLIFLYVSVRLMFALPKIVYDQLTVREAVMFSLEKTKKRVTFYAWNLFYILLKAHLLFYLPLIPLLLAQTLVDDITQRESLILGILNFVVIKNLYYMALTYFLVKFVSFLTGKELDMLPRREKDHIVRWGVMTCASLFFALEGYIYLEAPMVHLPQLISHRGVSNANGIQNTVESLETTAQLKPDLVETDVQETKDGQFVMMHDANLKNLAGINKSPQDLNLEELKGIDIFENGYQTKISSFEDYLSRANELGQKLLIEIKTSKKDSPDMMNRFLARYAAKLKIYGHQIQSLDYHVVEKVRQYDAELPVYFIMPYNSVFPKTRATGYTMEYSTLDEYFVSKLWTTDQKLYVWTVNDSEAISKSLHLGVDGVITDDLEKVQREIEVAQEDPEYTDLLLKKALEFFEF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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