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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS06125 [old locus tag: SPJ_1232 ]
  • pan locus tag?: PNEUPAN000231000
  • symbol: SPJ_RS06125
  • pan gene symbol?: ntpB
  • synonym:
  • product: V-type ATP synthase subunit B

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS06125 [old locus tag: SPJ_1232 ]
  • symbol: SPJ_RS06125
  • product: V-type ATP synthase subunit B
  • replicon: chromosome
  • strand: -
  • coordinates: 1179213..1180598
  • length: 1386
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (1179213..1180598) NCBI
  • BioCyc: SPJ_RS06125 BioCyc
  • MicrobesOnline: see SPJ_1232
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGAGTGTTATAAAAGAATACAGAACTGCTAGTGAAGTTGTTGGGCCTCTTATGATTGTT
    GAACAAGTAAATAATGTGTCTTACAATGAGTTAGTTGAAATTCAACTTCATAATGGAGAA
    ATTCGTCGTGGACAAGTTTTAGAGATCCACGAAGATAAAGCAATGGTTCAGCTTTTTGAA
    GGATCTAGTGGAATAAATTTAGAAAAGTCTAAAATTCGTTTTGCTGGTCATGCATTAGAA
    TTGGCTGTATCTGAGGATATGGTTGGTCGTATTTTTAATGGGATGGGAAAACCAATTGAT
    GGTGGACCAGATTTAATTCCAGAGAAATATTTAGATATTGATGGTCAAGCTATTAATCCT
    GTATCTAGAGATTATCCAGATGAATTTATTCAGACAGGGATCTCCTCTATTGATCATTTG
    AATACTCTTGTACGTGGTCAAAAATTACCAGTATTTTCAGGTTCGGGCTTACCTCATAAT
    GAATTAGCTGCTCAGATAGCAAGACAAGCGACTGTTTTAAATTCTGATGAAAATTTTGCG
    GTTGTATTTGCAGCAATGGGTATTACTTTTGAAGAAGCTGAGTTTTTTATGGAAGAACTC
    AGAAAAACAGGAGCGATCGATCGTTCGGTTTTATTTATGAACTTGGCAAATGATCCTGCA
    ATTGAGCGTATTGCAACTCCCCGCATTGCTTTAACTGCGGCAGAGTATCTAGCTTTTGAA
    AAAGATATGCACGTTCTAGTTATCATGACGGATATGACTAACTATTGTGAAGCGTTACGT
    GAAGTCTCGGCAGCTCGCCGTGAAGTTCCAGGGAGACGAGGCTATCCGGGATATTTATAT
    ACAAATTTATCAACTCTATACGAAAGGGCTGGTCGCTTAGTTGGTAAAAAAGGTTCGGTG
    ACACAGATTCCTATTTTAACAATGCCAGAAGATGACATAACACATCCAATTCCTGATTTA
    ACTGGATACATTACTGAAGGGCAAATTATTTTGTCGCATGAGTTGTATAATCAAGGTTAT
    CGTCCACCAATCAATGTTTTACCTTCTCTCTCTCGATTAAAAGATAAGGGATCTGGAGAA
    GGTAAAACTCGTGGAGATCATGCTCCAACTATGAATCAACTGTTTGCAGCCTATGCCCAA
    GGGAAAAAGGTTGAAGAGTTAGCAGTAGTATTAGGAGAATCGGCTTTATCTGATGTAGAT
    AAATTGTATGTGAGGTTTACAAAGCGTTTTGAAGAAGAGTACATAAACCAAGGATTTTAT
    AAAAATCGAAATATAGAAGATACGTTGAATCTTGGGTGGGAATTACTATCAATTCTTCCT
    AGAACAGAGTTAAAACGTATCAAAGATGATTTGCTTGATAAATACTTACCTTTGGTAGAA
    GTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1386

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS06125 [old locus tag: SPJ_1232 ]
  • symbol: SPJ_RS06125
  • description: V-type ATP synthase subunit B
  • length: 461
  • theoretical pI: 4.83468
  • theoretical MW: 51594.5
  • GRAVY: -0.227766

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase archaeal, B subunit (TIGR01041; EC 3.6.3.14; HMM-score: 769.5)
    Metabolism Transport and binding proteins Cations and iron carrying compounds V-type ATPase, B subunit (TIGR01040; EC 3.6.3.14; HMM-score: 682.9)
    and 12 more
    Cellular processes Cellular processes Chemotaxis and motility flagellar protein export ATPase FliI (TIGR03496; EC 3.6.3.14; HMM-score: 200.3)
    flagellar protein export ATPase FliI (TIGR03498; EC 3.6.3.14; HMM-score: 198.9)
    Metabolism Energy metabolism ATP-proton motive force interconversion ATPase, FliI/YscN family (TIGR01026; EC 3.6.3.14; HMM-score: 193.8)
    Cellular processes Cellular processes Pathogenesis type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 192.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 192.8)
    Cellular processes Cellular processes Chemotaxis and motility flagellar protein export ATPase FliI (TIGR03497; EC 3.6.3.14; HMM-score: 183.1)
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase F1, alpha subunit (TIGR00962; EC 3.6.3.14; HMM-score: 153.2)
    alternate F1F0 ATPase, F1 subunit alpha (TIGR03324; EC 3.6.3.-; HMM-score: 135.5)
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase F1, beta subunit (TIGR01039; EC 3.6.3.14; HMM-score: 127.7)
    alternate F1F0 ATPase, F1 subunit beta (TIGR03305; EC 3.6.3.-; HMM-score: 118.8)
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase archaeal, A subunit (TIGR01043; EC 3.6.3.14; HMM-score: 113.5)
    Metabolism Transport and binding proteins Cations and iron carrying compounds V-type ATPase, A subunit (TIGR01042; EC 3.6.3.14; HMM-score: 97.7)
  • TheSEED: see SPJ_1232
  • PFAM:
    P-loop_NTPase (CL0023) ATP-synt_ab; ATP synthase alpha/beta family, nucleotide-binding domain (PF00006; HMM-score: 222)
    and 2 more
    HAS-barrel (CL0275) ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain (PF02874; HMM-score: 44.1)
    HAS-barrel; HAS barrel domain (PF09378; HMM-score: 16.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002776
    • TAT(Tat/SPI): 0.00008
    • LIPO(Sec/SPII): 0.000214
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLNSDENFAVVFAAMGITFEEAEFFMEELRKTGAIDRSVLFMNLANDPAIERIATPRIALTAAEYLAFEKDMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLVGKKGSVTQIPILTMPEDDITHPIPDLTGYITEGQIILSHELYNQGYRPPINVLPSLSRLKDKGSGEGKTRGDHAPTMNQLFAAYAQGKKVEELAVVLGESALSDVDKLYVRFTKRFEEEYINQGFYKNRNIEDTLNLGWELLSILPRTELKRIKDDLLDKYLPLVEV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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