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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 20-APR-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_RS07210 [old locus tag: SPJ_1455 ]
- pan locus tag?: PNEUPAN002882000
- symbol: SPJ_RS07210
- pan gene symbol?: —
- synonym:
- product: YczI family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_RS07210 [old locus tag: SPJ_1455 ]
- symbol: SPJ_RS07210
- product: YczI family protein
- replicon: chromosome
- strand: -
- coordinates: 1383364..1383528
- length: 165
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012466 (1383364..1383528) NCBI
- BioCyc: SPJ_RS07210 BioCyc
- MicrobesOnline: see SPJ_1455
- PneumoBrowse for strain D39V: SPV_1379 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121ATGGGTTTTTATTTGATGGTTGCTTCAATGCTACTCGGACTGCTCGCTTTGAAGATAGGT
TTTTCTCAGTTCAAGGAGAACAAAGATAAATTCTTATCTATCTTAACAAGTTTAGCTGGG
CTAGCCCTTGTTCTCGTGGCTGTCTGGTTAGGATGGCCCAAATAA60
120
165
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_RS07210 [old locus tag: SPJ_1455 ]
- symbol: SPJ_RS07210
- description: YczI family protein
- length: 54
- theoretical pI: 10.3741
- theoretical MW: 5944.28
- GRAVY: 1.05556
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPJ_1455
- PFAM: no clan defined DUF3953; Protein of unknown function (DUF3953) (PF13129; HMM-score: 51.5)and 4 moreDUF981; Protein of unknown function (DUF981) (PF06168; HMM-score: 16.3)DUF5336; Family of unknown function (DUF5336) (PF17270; HMM-score: 15)2heme_cytochrom (CL0328) DUF2231; Predicted membrane protein (DUF2231) (PF09990; HMM-score: 11.3)no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 9.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.029761
- TAT(Tat/SPI): 0.001095
- LIPO(Sec/SPII): 0.130288
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGFYLMVASMLLGLLALKIGFSQFKENKDKFLSILTSLAGLALVLVAVWLGWPK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1379 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.