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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS09440 [old locus tag: SPJ_1903 ]
  • pan locus tag?: PNEUPAN003504000
  • symbol: SPJ_RS09440
  • pan gene symbol?: int
  • synonym:
  • product: recombinase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS09440 [old locus tag: SPJ_1903 ]
  • symbol: SPJ_RS09440
  • product: recombinase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1783389..1784816
  • length: 1428
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (1783389..1784816) NCBI
  • BioCyc: SPJ_RS09440 BioCyc
  • MicrobesOnline: see SPJ_1903
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATAACAACAAATAAAGTAGCTATATATGTCAGGGTATCGACGACAAACCAGGTTGAG
    GAGGGATACTCTATAGATGAGCAAAAAGACAAGCTTGAAGCCTACTGTAAAATCAAAGAC
    TGGAAAATCTACGATGTCTACGTTGATGGTGGTTTCTCAGGTGCTAACACTCAAAGACCT
    GAATTGGAGCGTTTAATCTCAGACGTGAAGCGCAAGAAAGTCGATATAGTGCTAGTCTAC
    AAGCTAGACCGCCTCAGTCGTAGCCAGAAAGATACTCTGTTTCTGATTGAAGATGTGTTT
    GCTAAAAACGATGTGGCATTTATCAGCTTGCAAGAAAACTTTGACACTTCTACGCCTTTC
    GGCAAGGCTTCAATCGGTATGCTATCAGTATTCGCTCAGCTGGAGCGTGAGCAGATTAAA
    GAGCGTATGATGTTAGGAAAAGAAGGACGGGCAAAGAATGGAAAATCCATGTCATGGACG
    ACAATAGCATTCGGCTATGATTACTCAAAAGAAACTGGCGTCTTATCAGTGAATCCGACC
    CAAGCGCTCATTGTCAACCGTATTTTCACGGAATACTTGAACGGTAAGCCAGTAGTCAAG
    ATCATCAGAGACTTAAATGCTGAAGGTCACGTTGGAAGAAAAAGACCTTGGGGCGAAACA
    ATCACGAAATACTTGCTGAAAAATGAAACCTATTTGGGAAAAGTAAAGTACAAAGATAAG
    GTATACGAGGGGCAGCATGAACCAATTATCACTCAAGAATTGTTTGACTTAGTCCAGCTT
    GAAGTCGAAAGAAGGCAGATTTCAGCCTATGAAAAATATAACAATCCAAGGCCGTTCAGG
    GCAAAGTATATGCTTTCTGGATTAATGAAATGCGGATATTGTGGTGCTTCACTTGGTCTG
    AGATATACAAGAAAAGACAAGAATGGAATCTCTCATCATAAATACCAATGCAGGAACCGA
    CACAGCAAAGATTTAGAAAAAAGATGCGAATCAGGGTGGTACTCTAAAGAGGAACTTGAA
    AGGGGTGTAATCAAGGAACTTGAAAGAATTAAATTTGATCCAAAATATAAAAATGAGACA
    CTCGCTAAGAAAGAAGAGACTATCAAGGTCGAGGAGATAAAGAAACAACTCGAACGGATA
    AATAATCAAGTCTCAAAATTAACAGAATTGTACTTGGACGAAATCATCACTCGGAAAGAG
    TTGGACGAGAAAAATGATAAAATCAAAACAGAAAGGCAATTCCTGGAAGAACAGCTCGAA
    AATCAAAAATCGAATGTTCTGAGCATCCGAAAGAGAAAGCTAACACGGCTACTAAAGGAC
    TTCGATGTTGAAAAATTAAGCTACGAAGATGCTTCAAAAATTGTCAAAAATATCATAAAA
    GAAATTATTGTTACAAAAGACGGCATGTCGATAACGCTAGATTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1428

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS09440 [old locus tag: SPJ_1903 ]
  • symbol: SPJ_RS09440
  • description: recombinase family protein
  • length: 475
  • theoretical pI: 9.62136
  • theoretical MW: 55545.5
  • GRAVY: -0.690316

⊟Function[edit | edit source]

  • TIGRFAM:
    ABC exporter membrane fusion protein, DevB family (TIGR02971; HMM-score: 12.3)
  • TheSEED: see SPJ_1903
  • PFAM:
    no clan defined Resolvase; Resolvase, N terminal domain (PF00239; HMM-score: 146.8)
    and 6 more
    Recombinase; Recombinase (PF07508; HMM-score: 56.2)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 39.1)
    no clan defined MDH; Methanol dehydrogenase beta subunit (PF02315; HMM-score: 13.3)
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 12.3)
    DUF5858; Family of unknown function (DUF5858) (PF19176; HMM-score: 10.8)
    FlxA; FlxA-like protein (PF14282; HMM-score: 8.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9307
    • Cytoplasmic Membrane Score: 0.0019
    • Cell wall & surface Score: 0.0024
    • Extracellular Score: 0.065
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016195
    • TAT(Tat/SPI): 0.000489
    • LIPO(Sec/SPII): 0.002596
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MITTNKVAIYVRVSTTNQVEEGYSIDEQKDKLEAYCKIKDWKIYDVYVDGGFSGANTQRPELERLISDVKRKKVDIVLVYKLDRLSRSQKDTLFLIEDVFAKNDVAFISLQENFDTSTPFGKASIGMLSVFAQLEREQIKERMMLGKEGRAKNGKSMSWTTIAFGYDYSKETGVLSVNPTQALIVNRIFTEYLNGKPVVKIIRDLNAEGHVGRKRPWGETITKYLLKNETYLGKVKYKDKVYEGQHEPIITQELFDLVQLEVERRQISAYEKYNNPRPFRAKYMLSGLMKCGYCGASLGLRYTRKDKNGISHHKYQCRNRHSKDLEKRCESGWYSKEELERGVIKELERIKFDPKYKNETLAKKEETIKVEEIKKQLERINNQVSKLTELYLDEIITRKELDEKNDKIKTERQFLEEQLENQKSNVLSIRKRKLTRLLKDFDVEKLSYEDASKIVKNIIKEIIVTKDGMSITLDF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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