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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS11090 [old locus tag: SPJ_2240 ]
  • pan locus tag?: PNEUPAN003920000
  • symbol: tsf
  • pan gene symbol?: tsf
  • synonym:
  • product: translation elongation factor Ts

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS11090 [old locus tag: SPJ_2240 ]
  • symbol: tsf
  • product: translation elongation factor Ts
  • replicon: chromosome
  • strand: -
  • coordinates: 2092536..2093576
  • length: 1041
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (2092536..2093576) NCBI
  • BioCyc: SPJ_RS11090 BioCyc
  • MicrobesOnline: see SPJ_2240
  • PneumoBrowse for strain D39V: SPV_2041 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCAGAAATTACAGCTAAACTTGTAAAAGAGTTGCGTGAAAAATCTGGTGCCGGTGTT
    ATGGACGCTAAAAAAGCGCTTGTAGAAACAGACGGTGACATCGAAAAAGCGATTGAATTG
    CTTCGTGAAAAAGGTATGGCTAAGGCAGCTAAGAAAGCTGACCGTGTTGCTGCAGAAGGT
    TTGACTGGTGTTTATGTTAACGGTAATGTTGCAGCAGTTATTGAAGTAAACGCTGAAACT
    GACTTCGTTGCAAAAAACGCTCAATTCGTTGAATTGGTAAATACTACAGCTAAAGTCATT
    GCTGAAGGAAAACCTGCTAACAACGAAGAAGCTCTTGCTTTGATAATGCCTTCAGGTGAA
    ACTCTTGAAGCTGCATACGTATCTGCAACAGCAACTATCGGAGAGAAAATCTCATTCCGT
    CGCTTTGCATTGATTGAAAAAACAGACGCACAACACTTTGGAGCATACCAACATAACGGT
    GGACGTATCGGTGTTATTTCAGTTGTTGAAGGTGGAGACGAAGCACTTGCTAAACAATTG
    TCAATGCACATCGCAGCGATGAAACCAACAGTTCTTTCTTACAAAGAATTGGATGAGCAA
    TTCGTTAAAGATGAGTTGGCACAATTGAATCACGTTATCGACCAAGACAACGAAAGCCGT
    GCAATGGTTAATAAACCAGCTCTTCCACACTTGAAGTATGGATCAAAAGCTCAATTAACT
    GATGATGTTATTGCTCAAGCTGAAGCTGACATCAAAGCTGAATTGGCTGCAGAAGGTAAA
    CCAGAAAAAATCTGGGACAAAATTATTCCAGGTAAAATGGATCGCTTCATGCTTGATAAC
    ACTAAAGTTGACCAAGCTTACACACTTCTTGCACAAGTTTACATCATGGATGACAGCAAG
    ACAGTTGAAGCATACCTTGAATCAGTTAACGCTTCGGTAGTTGAGTTTGCTCGCTTTGAA
    GTTGGTGAAGGTATCGAGAAAGCTGCAAACGACTTCGAAGCTGAAGTTGCAGCTACAATG
    GCAGCAGCCTTGAATAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1041

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS11090 [old locus tag: SPJ_2240 ]
  • symbol: Tsf
  • description: translation elongation factor Ts
  • length: 346
  • theoretical pI: 4.56342
  • theoretical MW: 37361.2
  • GRAVY: -0.158092

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Translation factors translation elongation factor Ts (TIGR00116; HMM-score: 313.8)
  • TheSEED: see SPJ_2240
  • PFAM:
    no clan defined EF_TS; Elongation factor TS (PF00889; HMM-score: 227.1)
    and 3 more
    TPR (CL0020) ELMO_ARM; ELMO, armadillo-like helical domain (PF11841; HMM-score: 14.4)
    UBA (CL0214) UBA; UBA/TS-N domain (PF00627; HMM-score: 13.1)
    S11_L18p (CL0267) acVLRF1; Actinobacteria/chloroflexi VLRF1 release factor (PF18859; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 10
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9914
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0086
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007192
    • TAT(Tat/SPI): 0.001102
    • LIPO(Sec/SPII): 0.000702
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAEITAKLVKELREKSGAGVMDAKKALVETDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVNGNVAAVIEVNAETDFVAKNAQFVELVNTTAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFALIEKTDAQHFGAYQHNGGRIGVISVVEGGDEALAKQLSMHIAAMKPTVLSYKELDEQFVKDELAQLNHVIDQDNESRAMVNKPALPHLKYGSKAQLTDDVIAQAEADIKAELAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQAYTLLAQVYIMDDSKTVEAYLESVNASVVEFARFEVGEGIEKAANDFEAEVAATMAAALNN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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