From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN032672
  • locus tag: SPN032672_RS00575
  • pan locus tag?: PNEUPAN002275000
  • symbol: SPN032672_RS00575
  • pan gene symbol?: —
  • synonym:
  • product: DnaD domain protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN032672_RS00575
  • symbol: SPN032672_RS00575
  • product: DnaD domain protein
  • replicon: chromosome
  • strand: +
  • coordinates: 104169..104978
  • length: 810
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_021003 (104169..104978) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGCAAAAACAAAAGTCTATTTTTGGCTAAAAATTGATAAGAAATTTTTTGATAATATT
    TTTATCAAGAGACTAAAGACGGTACCTGGTGGGTACACTATGACAGTTATTTATATTAGG
    CTCATGTTAGAGAGCTTGGAAAGTGACTGTATTTTATACTATGAGGGCTACTTTAACAAT
    CTCAAGGAAGAGTTAGCCCTAAAATTAGATGTATCAGAAGATGATATAGATATGACCATG
    GCATACTTTACAAAATGCGGTTTAATACAGATTGACGAAGATAAAAACGCAGAACTACCA
    CAGGCAAAAGCTATGGTTATGAGTGAAACAAACTGGGCGAGTTATAAACGTGAACAACGA
    AAAAAAGGAAAATTGGAAGAAGTCCAACCATCTTTGACATTTTCCAACTCATGTCCAACA
    GAGATAGAGAAAGAATTAGAGATAGAAGTAGATAAAGAACAATCACCCACTCCCTCTACC
    ATCAATCAAGATTTTGTAAATCTCTATAAATCTTTTGAAGCTGAGACAGGTAAAGCATTG
    TCACCGTTACAGATTCAAGAATTGCAGTATATGCTAGAAGATTTTAGCCCAGAGCTTATC
    CATGAGGCGTTAAAAGAGGCTGTCAGTCAGGGTAAAGCAAACTTTGCATACATCAAGGCA
    ATCCTTAACCGTTGGAAACAGGACAATTTATTGACGGTGGAACTTGTTAGAAATAGCAGG
    GCAGCGCGTGAGGCTAAAAAACAGCAAACCAATCAACTAGAGCCTACCAGCTATGAAGAT
    TGGATACCAACACAAGAAAAACCATTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    810

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN032672_RS00575
  • symbol: SPN032672_RS00575
  • description: DnaD domain protein
  • length: 269
  • theoretical pI: 4.69969
  • theoretical MW: 31339.6
  • GRAVY: -0.549814

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 88.4)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 88.4)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage replisome organizer, putative, N-terminal region (TIGR01714; HMM-score: 76.3)
  • TheSEED:
  • PFAM:
    no clan defined DnaB_2; Replication initiation and membrane attachment (PF07261; HMM-score: 64.2)
    HTH (CL0123) Phage_rep_org_N; N-terminal phage replisome organiser (Phage_rep_org_N) (PF09681; HMM-score: 58.7)
    and 1 more
    TetR_C (CL0174) TetR; Bacterial transcriptional repressor (PF13972; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9957
    • Cytoplasmic Membrane Score: 0.0007
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0034
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003098
    • TAT(Tat/SPI): 0.000116
    • LIPO(Sec/SPII): 0.00041
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001140556 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAKTKVYFWLKIDKKFFDNIFIKRLKTVPGGYTMTVIYIRLMLESLESDCILYYEGYFNNLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDKNAELPQAKAMVMSETNWASYKREQRKKGKLEEVQPSLTFSNSCPTEIEKELEIEVDKEQSPTPSTINQDFVNLYKSFEAETGKALSPLQIQELQYMLEDFSPELIHEALKEAVSQGKANFAYIKAILNRWKQDNLLTVELVRNSRAAREAKKQQTNQLEPTSYEDWIPTQEKPF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN032672_RS00575&oldid=135438"