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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN032672
- locus tag: SPN032672_RS09895
- pan locus tag?: PNEUPAN001711000
- symbol: SPN032672_RS09895
- pan gene symbol?: livJ
- synonym:
- product: ABC transporter substrate-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN032672_RS09895
- symbol: SPN032672_RS09895
- product: ABC transporter substrate-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1855843..1857003
- length: 1161
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_021003 (1855843..1857003) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0652 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1141ATGAAGAAAAAATTTGCCCTATCGTTTGTGGCGCTTGCAAGTGTAGCACTTCTTGCAGCC
TGTGTAGAAGTGAAGTCTGGAGCAGTCAACACTGCTGGTAACTCAGTAGAGGAAAAGACA
ATTAAAATCGGGTTTAACTTTGAAGAATCAGGTTCTTTAGCTGCATACGGAACAGCTGAA
CAAAAAGGTGCCCAATTGGCTGTTGATGAAATCAATGCCGCAGGTGGTATCGATGGAAAA
CAAATCGAAGTAGTCGATAAAGATAATAAGTCTGAAACAGCTGAGGCTGCTTCAGTTACA
ACTAACCTTGTAACCCAATCTAAAGTATCAGCAGTCGTAGGACCTGCGACATCTGGTGCG
ACTGCAGCTGCGGTAGCGAACGCTACAAAAGCAGGTGTTCCATTGATCTCACCAAGTGCG
ACTCAAGATGGATTGACTAAAGGTCAAGATTACCTCTTTATTGGAACTTTCCAAGATAGC
TTCCAAGGAAAAATTATCTCAAACTATGTTTCTGAAAAATTAAATGCTAAGAAAGTTGTT
CTTTACACTGACAATGCCAGTGACTATGCTAAAGGGATTGCTAAATCTTTCCGCGAGTCA
TACAAGGGTGAAATCGTTGCAGATGAAACTTTCGTAGCAGGTGACACAGACTTCCAAGCA
GCCCTTACAAACATGAAAGGGAAAGACTTTGATGCTATCGTTGTTCCTGGTTACTATAAT
GAGGCTGGTAAGATTGTAAACCAAGCGCGTGGCATGGGAATTGACAAACCAATCGTTGGT
GGTGATGGATTCAACGGTGAGGAGTTTGTACAACAAGCAACTGCTGAAAAAGCATCAAAC
ATCTACTTTATCTCAGGCTTCTCAACTACTGTAGAAGTTTCAGCTAAAGCTAAAGCCTTC
CTTGACGCTTACCGTGCTAAGTACAATGAAGAGCCTTCAACATTTGCAGCCTTGGCTTAT
GATTCAGTTCACCTTGTAGCAAACGCAGCAAAAGGTGCTAAAAATTCAGGTGAAATCAAG
GATAACCTTGCTAAAACAAAAGATTTTGAAGGTGTAACTGGTCAAACAAGCTTCGATGCA
GACCACAACACAGTCAAAACTGCTTACATGATGACCATGAACAATGGTAAAGTTGAAGCA
GCAGAAGTTGTAAAACCATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN032672_RS09895
- symbol: SPN032672_RS09895
- description: ABC transporter substrate-binding protein
- length: 386
- theoretical pI: 4.8502
- theoretical MW: 40443
- GRAVY: -0.164767
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, substrate-binding protein (TIGR03669; HMM-score: 74.1)Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, urea binding protein (TIGR03407; HMM-score: 62.2)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Periplas_BP (CL0144) Peripla_BP_6; Periplasmic binding protein (PF13458; HMM-score: 200.4)and 2 moreANF_receptor; Receptor family ligand binding region (PF01094; HMM-score: 102.8)Peripla_BP_5; Periplasmic binding protein domain (PF13433; HMM-score: 75.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
- SP(Sec/SPI): 0.009581
- TAT(Tat/SPI): 0.000102
- LIPO(Sec/SPII): 0.990022
- Cleavage Site: CS pos: 20-21. LAA-CV. Pr: 0.9908
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000726154 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKKKFALSFVALASVALLAACVEVKSGAVNTAGNSVEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTNMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAKNSGEIKDNLAKTKDFEGVTGQTSFDADHNTVKTAYMMTMNNGKVEAAEVVKP
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0652 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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