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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN034156
- locus tag: SPN034156_07580 [new locus tag: SPN034156_RS04205 ]
- pan locus tag?: PNEUPAN003505000
- symbol: SPN034156_07580
- pan gene symbol?: ytpR
- synonym:
- product: putative tRNA-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN034156_07580 [new locus tag: SPN034156_RS04205 ]
- symbol: SPN034156_07580
- product: putative tRNA-binding protein
- replicon: chromosome
- strand: -
- coordinates: 777172..777798
- length: 627
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312045 (777172..777798) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1713 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGATTTTTACGTATAACAAAGAACATGTCGGTGATGTCCTTATGGTCATCGTGAAAAAT
AGCGGAGATGCCAAACTGAATGTGGAACGCAAAGGCAAGGTAGCCCGTGTTTTCCTCAAA
GAAAATGGGGAAACAGTAGCTTGGAACATTTTTGAGGTTTCGAGCTTGTTTGAAATTGCA
GAGCGCGGTCAAGTCTTTTTATCAGATGAGCAAGTCGCTCGTTTGAACCAAGAATTACAG
GCGGAAGGTTTTACAGAAGAAATTGTTAATGATAAGGAACCTAAGTTTGTTGTTGGTGAA
ATTGTCGAGATGGTAGCTCATCCAGACAGTGACCACCTCAACATCTGCCAAGTTGCAGTC
GCAAGTGACAAGATAGTGCAAATCGTTGCAGGAGCACCTAATGCGCGTGTTGGGTTGAAA
ACCATTGTGGCTCTTCCTGGTGCCATGATGCCAAAAGGGAATTTCATTTTCCCAGGCGAA
CTTCGTGGTGAAAAGAGTTTTGGGATGATGTGTAGTCCTCGTGAATTGCATTTGCCAAAT
GCTCCGCAAAAACGTGGGGTGCTTGAATTATCAGAAGACCAAGTTGTCGGAACACCGTTC
GACCCAGCGAAACACTGGACTGCCTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN034156_07580 [new locus tag: SPN034156_RS04205 ]
- symbol: SPN034156_07580
- description: putative tRNA-binding protein
- length: 208
- theoretical pI: 5.13589
- theoretical MW: 22925.2
- GRAVY: -0.105288
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis tRNA aminoacylation phenylalanine--tRNA ligase, beta subunit (TIGR00472; EC 6.1.1.20; HMM-score: 115.3)
- TheSEED :
- Phenylalanyl-tRNA synthetase domain protein (Bsu YtpR)
- PFAM: no clan defined DUF4479; Domain of unknown function (DUF4479) (PF14794; HMM-score: 94.5)and 1 moreOB (CL0021) tRNA_bind; Putative tRNA binding domain (PF01588; HMM-score: 62.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9977
- Cytoplasmic Membrane Score: 0.0002
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.002
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002861
- TAT(Tat/SPI): 0.000131
- LIPO(Sec/SPII): 0.000403
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP36427 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIFTYNKEHVGDVLMVIVKNSGDAKLNVERKGKVARVFLKENGETVAWNIFEVSSLFEIAERGQVFLSDEQVARLNQELQAEGFTEEIVNDKEPKFVVGEIVEMVAHPDSDHLNICQVAVASDKIVQIVAGAPNARVGLKTIVALPGAMMPKGNFIFPGELRGEKSFGMMCSPRELHLPNAPQKRGVLELSEDQVVGTPFDPAKHWTA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1713 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]