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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN034156
  • locus tag: SPN034156_11960 [new locus tag: SPN034156_RS06715 ]
  • pan locus tag?: PNEUPAN000739000
  • symbol: SPN034156_11960
  • pan gene symbol?: pgaC
  • synonym:
  • product: putative glycosyl transferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN034156_11960 [new locus tag: SPN034156_RS06715 ]
  • symbol: SPN034156_11960
  • product: putative glycosyl transferase
  • replicon: chromosome
  • strand: +
  • coordinates: 1237234..1238394
  • length: 1161
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: FQ312045 (1237234..1238394) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0098 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTCAAGTAAGGTTTCTGGCTTTCAAGATAAAAATGGGAAAGTCTGGAAAATTATGATA
    GAATGGTGGAAGGAAAAATTCAGGAGAGTAGTAGTGACTCAAAATGTTGAAAGTCTTCTC
    GTATCCATTGTAATCAGTGCATACAATGAAGAAAAATATCTGCCTGGTCTAATTGAAGAC
    TTAAAAAATCAAACTTATCCTAAAGAGAATATTGAAATTCTATTTATAAATGCTATGTCC
    ACAGATGGGACCACAGCTATCATTCAGCAATTTATAAAGGAAGATACAGAGTTTAACTCA
    ATTAGATTGTATAACAATCCTAAGAAAAATCAAGCTAGTGGTTTTAACCTGGGAGTTAAA
    CATTCTGTAGGGGACCTTATTTTAAAAATTGATGCTCATTCAAAAGTTACTGAGAGTTTT
    GTAATGAACAATGTGGCTATTATTCAACAAGGTGAATTTGTCTGTGGGGGGCCTAGACCG
    ACGATTGTCGAAGGAAAAGGAAAATGGGCAGAGACCTTGCATCTTGTTGAGGAAAATATG
    TTTGGCAGTAGTATTGCCAATTATCGAAATAGTTCCGAAGATAGATATGTTTCTTCTATT
    TTTCATGGGATGTATAAACGAGAGGTTTTCCAGAAGGTTGGTTTAGTAAATGAGCAACTT
    GGCCGAACTGAAGATAATGATATTCATTATAGAATTCGAGAACATGGTTATAAAATTCGC
    TATAGCCCAAGTATTCTATCTTATCAGTATATTCGACCAACATTCAAGAAAATGCTGTAT
    CAAAAGTATTCAAATGGTTTGTGGATTGGCTTGACAAGTCATGTTCAGTTTAAGTGTTTA
    TCATTATTTCACTATGTTCCTTGTTTATTTGTTTTGAGTCTTGTGTTTAGTCTAGCATTG
    TTACCGATCACATTCGTATTCATAACTTTACTATTAGGTGCCTATTTTCTACTTTTGTCA
    CTACTCACTTTGCTGACTTTATTAAAACATAAAAATGGATTTCTAATTGTGATGCCCTTT
    CTTTTATTTTCCATTCACTTTGCTTATGGCTTTGGGACGATTGTAGGTTTAATTAGAGGA
    TTTAAATGGAAGAAGGAGTACAAGGGAACAATAATTTATTTGGATAAAATAAGCCAAATA
    AATCAAAATATGCTACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1161

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN034156_11960 [new locus tag: SPN034156_RS06715 ]
  • symbol: SPN034156_11960
  • description: putative glycosyl transferase
  • length: 386
  • theoretical pI: 9.7371
  • theoretical MW: 44529.6
  • GRAVY: 0.00984456

⊟Function[edit | edit source]

  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 73)
    and 6 more
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 48.8)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 46.1)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 40.8)
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 20.5)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 19.1)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 12.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 85.7)
    and 4 more
    Glyco_trans_2_3; Glycosyl transferase family group 2 (PF13632; HMM-score: 41.8)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 34.8)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 31.6)
    Anp1; Anp1 (PF03452; HMM-score: 22.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9948
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0048
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00322
    • TAT(Tat/SPI): 0.000199
    • LIPO(Sec/SPII): 0.000413
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCP36865 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSSKVSGFQDKNGKVWKIMIEWWKEKFRRVVVTQNVESLLVSIVISAYNEEKYLPGLIEDLKNQTYPKENIEILFINAMSTDGTTAIIQQFIKEDTEFNSIRLYNNPKKNQASGFNLGVKHSVGDLILKIDAHSKVTESFVMNNVAIIQQGEFVCGGPRPTIVEGKGKWAETLHLVEENMFGSSIANYRNSSEDRYVSSIFHGMYKREVFQKVGLVNEQLGRTEDNDIHYRIREHGYKIRYSPSILSYQYIRPTFKKMLYQKYSNGLWIGLTSHVQFKCLSLFHYVPCLFVLSLVFSLALLPITFVFITLLLGAYFLLLSLLTLLTLLKHKNGFLIVMPFLLFSIHFAYGFGTIVGLIRGFKWKKEYKGTIIYLDKISQINQNMLQ

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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