Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 10-APR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN034156
- locus tag: SPN034156_RS04460 [old locus tag: SPN034156_08070 ]
- pan locus tag?: PNEUPAN003584000
- symbol: SPN034156_RS04460
- pan gene symbol?: —
- synonym:
- product: DUF1146 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN034156_RS04460 [old locus tag: SPN034156_08070 ]
- symbol: SPN034156_RS04460
- product: DUF1146 family protein
- replicon: chromosome
- strand: -
- coordinates: 827068..827298
- length: 231
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_021006 (827068..827298) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2422 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGGTTCAATTATTATTCACTCTAAGTAGTCATATGTTCTTTATTTATGTGAGTTTTTAC
CTTTTAAAGGATCTTGTTAGATGGGAGAAGGTTTTAAAAGTGACAGATGATAATACAAGA
AAAGTTCGTTTATTAGTAGCCTTTTTTAGCATTGTCATAGGCTACATCCTGAGTTCTTTC
TTTATTAGCCTGTATCATTTGTGGCAAGAAGCGCTTAGAGGATTATTATGA60
120
180
231
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN034156_RS04460 [old locus tag: SPN034156_08070 ]
- symbol: SPN034156_RS04460
- description: DUF1146 family protein
- length: 76
- theoretical pI: 9.91345
- theoretical MW: 9093.83
- GRAVY: 0.781579
⊟Function[edit | edit source]
- TIGRFAM: conserved hypothetical integral membrane protein (TIGR02327; HMM-score: 57.5)and 1 moreUnknown function Enzymes of unknown specificity substrate import-associated zinc metallohydrolase lipoprotein (TIGR04549; HMM-score: 17.1)
- TheSEED: data available for Hungary19A-6
- PFAM: no clan defined DUF1146; Protein of unknown function (DUF1146) (PF06612; HMM-score: 55.6)and 4 moreSPC12; Microsomal signal peptidase 12 kDa subunit (SPC12) (PF06645; HMM-score: 14.2)Choline_transpo; Plasma-membrane choline transporter (PF04515; HMM-score: 14.1)DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 10.9)Viral_Beta_CD; Viral Beta C/D like family (PF04530; HMM-score: 9.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0009
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002342
- TAT(Tat/SPI): 0.000073
- LIPO(Sec/SPII): 0.010051
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000250384 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MVQLLFTLSSHMFFIYVSFYLLKDLVRWEKVLKVTDDNTRKVRLLVAFFSIVIGYILSSFFISLYHLWQEALRGLL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2422 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]