From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN034183
  • locus tag: SPN034183_00340 [new locus tag: SPN034183_RS00200 ]
  • pan locus tag?: PNEUPAN000408000
  • symbol: SPN034183_00340
  • pan gene symbol?: dnaC_1
  • synonym:
  • product: DNA replication protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN034183_00340 [new locus tag: SPN034183_RS00200 ]
  • symbol: SPN034183_00340
  • product: DNA replication protein
  • replicon: chromosome
  • strand: +
  • coordinates: 31359..32147
  • length: 789
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: FQ312043 (31359..32147) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGCGGAGGTCGGCTAGTATGGTAGACAATGTGTTTGAGGAAATCGCCTTATCTTATCGT
    AGGAATACAGAACAACAAGAAGAGTTCTGCGAAAAGCATAACATCCCTTTGATAAAGATA
    TTGAGGACCGAGAGTGTTGTATGTCGCATGTGTGAATCTGAGCGGATTCATGAAGAAAAT
    CAGGAAAGAGTGAATGAACTGGCTAATGCTGAGAATGAGCGAGAGAGGAAATACTATCTT
    GAAAAGTTCTCTCTTTATGATGAAGTTTTGAAAAATGCTACTTTGGACAATTTTGAAACA
    CCAACCGAAAAAGAAGCGGAAAAGCTAGCTTTTGCAAAGAGGATTTGTCGTGAGTGGTCT
    GAGGGTGCTAGGAACAACATCGTGTTACAAGGAGAAGCTGGAACAGGTAAGAGCCATTTG
    GCTTTTGCTATGGTTAAGGTTCTATCTGAGTACACGAAAGAGATTGCTATTTTTATTAAC
    GTAACTGACTTGCTGATGAAGATTAAAGCTGATTTTAGTCAGGAAGAGTTTCTGGTCAAT
    AAAATTGCTAGTGCTAAGTTCTTGGTTTTGGATGATTTAGGAATGGAAAAAGATAGCGAA
    TGGTCATTTACTATTCTCTACAATATCTTGAATAAGCGTTCAAACACAATCATTACCACA
    AATTTGATTTCTGCCGATATTCAAAAAAGATATGGCAGACCTTTCATGTCCAGACTAATG
    AAGGGTGTAGATAAAGACCATTTGATGGTTTTCAATGATTTGACAAACAAGCGAAAGCAA
    TATTTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    789

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN034183_00340 [new locus tag: SPN034183_RS00200 ]
  • symbol: SPN034183_00340
  • description: DNA replication protein
  • length: 262
  • theoretical pI: 6.18063
  • theoretical MW: 30724.9
  • GRAVY: -0.514885

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 31.2)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair chromosomal replication initiator protein DnaA (TIGR00362; HMM-score: 29.3)
    and 4 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair orc1/cdc6 family replication initiation protein (TIGR02928; HMM-score: 18.8)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides putative ATP-dependent protease (TIGR00764; HMM-score: 14.4)
    Metabolism Energy metabolism Sugars L-rhamnose mutarotase (TIGR02625; EC 5.1.3.-; HMM-score: 12.8)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 12.1)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    P-loop_NTPase (CL0023) IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 45.9)
    and 22 more
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 21.2)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 20.7)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 19.9)
    Bac_DnaA; Bacterial dnaA protein (PF00308; HMM-score: 19.3)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 18.6)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 17)
    AAA_14; AAA domain (PF13173; HMM-score: 16.5)
    Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 15.4)
    DUF2075; Schlafen group 3, DNA/RNA helicase domain (PF09848; HMM-score: 15.4)
    Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 15.3)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.3)
    AAA_18; AAA domain (PF13238; HMM-score: 14.2)
    AAA_22; AAA domain (PF13401; HMM-score: 14.2)
    no clan defined RPAP1_N; RPAP1-like, N-terminal (PF08621; HMM-score: 14)
    P-loop_NTPase (CL0023) NACHT; NACHT domain (PF05729; HMM-score: 13.8)
    Parvo_NS1; Parvovirus non-structural protein NS1 (PF01057; HMM-score: 13.4)
    PhoH; PhoH-like protein (PF02562; HMM-score: 13.3)
    no clan defined Lipin_N; lipin, N-terminal conserved region (PF04571; HMM-score: 13.1)
    P-loop_NTPase (CL0023) AAA_30; AAA domain (PF13604; HMM-score: 12.3)
    T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 12.2)
    CbiA; CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656; HMM-score: 12.1)
    AAA_11; AAA domain (PF13086; HMM-score: 10.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9934
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0056
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006774
    • TAT(Tat/SPI): 0.000747
    • LIPO(Sec/SPII): 0.001093
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCP31744 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRRSASMVDNVFEEIALSYRRNTEQQEEFCEKHNIPLIKILRTESVVCRMCESERIHEENQERVNELANAENERERKYYLEKFSLYDEVLKNATLDNFETPTEKEAEKLAFAKRICREWSEGARNNIVLQGEAGTGKSHLAFAMVKVLSEYTKEIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFTILYNILNKRSNTIITTNLISADIQKRYGRPFMSRLMKGVDKDHLMVFNDLTNKRKQYF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN034183_00340&oldid=143725"