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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN034183
- locus tag: SPN034183_00580 [new locus tag: SPN034183_RS12400 ]
- pan locus tag?: PNEUPAN000429000
- symbol: SPN034183_00580
- pan gene symbol?: —
- synonym:
- product: pblB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN034183_00580 [new locus tag: SPN034183_RS12400 ]
- symbol: SPN034183_00580
- product: pblB
- replicon: chromosome
- strand: +
- coordinates: 48177..54482
- length: 6306
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312043 (48177..54482) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901
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1021
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1981
2041
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2281
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2581
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6121
6181
6241
6301ATGGCTCTTTCTCGCATGGTACAAAACACCAAAACAGCTCTTGGAGACTTCTCATTCAAC
AGTGATATCCAGGACCGTAGGACATTCAACACGACTGAGACAGAAACCCTGTACTCTGTA
TTGCTGGACGGCAAGCATAGTATCGTCGGAACGTGGGAAGGCGAGCTGGTGCGTGATAAC
TTTGCGATGACTGTAAAGAAGAGTCGTGGTGAGAATCGTGGTGTTGTTATTACAACACAT
AAGAATCTGAAGGACTACCAACGCACAAAAAACAGTCAGAATGTTGTCACAAGAATTCAC
GCAAAGTCGACTTTTAAACCTGAAGGTGCTGAAAAAGAAACGACTATCAGAGTGACTGTT
GATAGTCCTCTTATCAACTCATACCCTTATATCAATGAAAAAGAGTATGAGAACAACAAT
GCTAAAACTGTTGAAGAGTTGCAGAAGTGGGCACAGTCTAAGTTTTCAAATGAGGGAATT
GACAAGGTCTCTGATGCTATCAAGATTGAAGCTTATGAACTTGATGGGCAAGTGGTCCAT
ATGGGCGACACGGTCAATCTCAAGAGCTGGAAACATAATGTCGATGCATTCAAGAAAGCT
ATTGCTTATGAGTTCGATGCCTTAAAAGAAGAATACATCTCTCTGACTTTCGATGATAAG
GCAGGTATTGGTGGTTCTAGAGCTTCTGGTGGCCTATCTAGCGCAGCCGATGCAATTCTT
GGAGTGACAGAATCTGCACAAGAAATCGCCCTTGAAAAGGCTCTTCAAAATGCTGACTTA
GACTTTGATCATAAGGCTGGATTGCTTAGACAGGAAATTTCTGACGATATTGAACTGGCC
AAAGCCAGAGCTGAAGAAGTCAAGAGAGAACTGTCTGACACTATCAATCAGCGATTTAAT
AGCTTTGACAACGGGCCATTGAAAGAAACTAAGCGCAAGGCTGAGGAAGCTTTGCGAAAT
GCTGGCGCAAGTAGTTCTCTTGCTCAGGAATCCAAGCGGATTGGGCTGGATTCTGTTGCT
AGACTTGAAGCGTTTAAGTCGCAGACTACGAGCGCACAAACGGCTCTGTCGGGTGACTTG
GACGCTCTGAAACGGACTATTGCGAATGATATTCGACCGAAGCAAGCACAGGCTGAAGCT
GAGATTGCCAAGCAAGTTGAAGCACTTAGCCGGACTAAAAATGAACTGGCTGGCGCAAGT
ACCCTGCTTGCACAGGAAGCTAAGCGGATTGAGCTGGATTCTGTTGCTAGACTTGAAGCG
TTTAAGTCGCAGACTACGAGCGCACAAACGGCTCTGTCGGGTGACTTGGACGCTCTGAAA
CGGACTATCGCGAATGATATTCGACCGAAGCAAGCACAGGCTGAAGCTGAGATTGCCAAG
CAAGTTGAAGCACTTAGCCGGACTAAAAATGAACTGGCTGGCGCAAGTACCCTGCTTGCA
CAGGAAGCTAAGCGGATTGAGTTGGATTCTGTTGCTAGACTTGAAGCGTTTAAGTCGCAG
ACTACGAGCGCACAAACGGCTCTGTCAGGTGACTTGGACGCTCTGAAACGGACTATAGTG
AATGATATTCGACCGAAGCAAGCACAGGCTGAAGCTGAGATTGCCAAGCAAGTTGAAGCA
CTTAGCCGGACTAAGAATGAACTGGCTGGCGTGAAGTCAGCGCAAGCGACGTATAAGGAG
ACGACGACTCGTAGACTGTCAGAACTGACCAACTTGGCCAATGGTAAAGCCAGTAAGTCA
GAACTCACGCAGACAGCTGAGGAGCTCTCTAGTAAGATAGCGAGTGTGCAGGCATCCGGT
CGAAATCTATTCTTGAACTCACTATTTAAGCAGGATATTCCAAAAACAGGAATTTGGACA
ACGAGTACATATACGGCTACTATCGATAGCGAAAGTAAGTATCTTGGACACAAGGCTCTT
AAAATTATAGGTCTGAATCCATCTGGCCGTGATGGAGGTAATCCCAAGGTTACTTATCCA
GCTCTGGGTCAATTCGGGAAAGTAATTCCCGGAAGTACGACTAATCAAGATGTAACCATT
AGTTTTTATGCTAAGGCAAATAAAAATGGAATAATGCTAAGATCTCGATTAGGGAATATC
GGATATAAAACTGGAAATGTGACATTGTCGACAGAAATTAAGCGATATGCTGTCCATATT
CCAAAAGGTTGGACAAACGAATCCAAGCGGACCACAAATGAATGGTTGTTCAATTTCAAC
CAAGAAGGAACCGTTTGGATTTGGATGCCGAAGTTTGAAATAAGCGATGTAGATACTTCT
TATTCAGAAGCTCCTGAAGATATAGAAGGTCAGATTTCAACAGTAGAATCGACCTTCAAA
CAACGAGCCAACTCGCTCGAAGCTGGTGTAAGCCGTCTGACTGAAGGCCTTAGAACCAAA
GCGGATATCAGCTCACTCAATGTGACTGCTGAGAATATCCGGCAATCTGTGAAGAGCCTT
GAGACAGACACGCAGAACAAGCTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGA
GCTGGCTCTATCCGTCAGGAAATCCTGAACGCAACCAAGGATAAAGCAGATAAGACTTTA
GTTGTATCTGAAGCCGGGAAATTGCGTGAAGAATTTTCAAAAATGAAGGTGGGAGGCCGG
AATCTATGGATAAAATCCAAGACGGTTGGAGCTGTAATTGAAAAATTACCTGAAAACCAC
GTCACAGGTCAAAAAGAATGTTATAGGTTAGAGAACAACTCTACTTTAACGTTCAACCTT
GAACCAGATTTCAGCTCAAGGTTGTATCAAAAAGTTACTTTTAGCGCTTGGATCAAGTAC
GAAAATGTAGTCCAAGGTCGAAACTTTTGGAATGTATTTAATTGCTTCAAACATTATCTT
TTTAGAAAAAATAGTGAGACCGGAGTACAGAGTGGTCCAGATTATGATACGCTTGGTAGG
TATAAAGGTTCGGCAGATTGGAAATATATTACATTCACTTATGACTACTCTGAAAAAACA
AATTTTGATCAATTGAAGACATTATTGCGATTCAATCTTGAAGGTGCTACAAGCGGTACA
GCTTGGGTAACAGGAATCAAGGTTGAAATCGGTAGTGTGGCGACGGACTGGAGTCCTGCG
CCTGAGGACGCTGATGGTCTCATTACTGAAGCTAAGGCTACCTTTGAGCGGACAGCTCAG
GGCTTGCGAACCGACTTATCAGCTATTACTGAAGGGCTTAGAACCAAAGTGGATATCAGC
GCACTCAACGTGACTGCTGAAAATATCCGGCAATCTGTAAAGAGTCTTGAGACAGACACG
CAGAACAAACTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGAGCCGGCTCTATC
CGTCAGGAAATCCTGAACGCAACCAAGGATAAAGCAGATAAGACTTTAGTTGTATCTGAA
GCCGGGAAATTGCGTGAAGAATTTTCAAAAATGAAGGTGGGAGGCCGGAATCTATGGATA
AAATCCAAGACGGTTGGAGCTGTAATTGAAAAATTACCTGAAAACCACGTCACAGGTCAA
AAAGAATGTTATAGGTTAGAGAACAACTCTACTTTAACGTTCAACCTTGAACCAGATTTC
AGCTCAAGGTTGTATCAAAAAGTTACTTTTAGCGCTTGGATCAAGTACGAAAATGTAGTC
CAAGGTCGAAATTTTTGGAATGTATTTAATTGCTTCAAACATTATCTTTTTAGAAAAAAT
AGTGAGACCGGAGTACAGAGTGGTCCAGATTATGATACGCTTGGTAGGTATAAAGGTTCG
GCAGATTGGAAATATATTACATTCACTTATGACTACTCTGAAAAAACAAATTTTGATCAA
TTGAAGACATCATTGCGATTCAATCTTGAAGGTGCTACAAGCGGCACAGCTTGGGTAACA
GGAATCAAGGTTGAAATCGGTAGTGTGGCGACGGACTGGAGTCCTGCGCCTGAGGACGCT
GATGGTCTCATCACTGAAGCTAAGGCTACCTTTGAGCGGACAGCTCAGGGCTTGCGAACC
GACTTATCAGCTATTCAGGAATATGTAAATAAAGACGGTCAGCGACAGGAAGCCCTACAG
CGCTATACTCGTGAGGAGAGCACGAGACAAGCGACAGCAGTCCGTGAGCTGGTCAATCGT
GATTTCGTTGGTAAGGCTACTTATCAAGAAGATGTTAAGGGTATCAATCAAAGGATTGAA
GCTGTTAAAACTAGTGCGAATAAAGACATCGCTAGTCAAATCGCTAGCTATCGTCAATCT
GTAGATGGTAAGTTCACGGATATTTCAAGTCAGATAACTACTTATAAGCAAGATGTGGGC
GGTCAAATCAGTGGTCTATCAAATAGACTTACAAGCAGTGAGCAAGGAACCACTACTCAG
ATTTCAAATCTTTCAAATCGGATAAACAGTAATAAGCAAGGCACAGATAATCAGATTTCA
AATTTAAAGACTCAGGTCGCTACAAACAAGGATAATGCTGAACGACAAATGGGTAGAATA
TCTGATCAGGTTTCTGCAAACAAAGCGAATGCTGATAGTCAATTTGCGAATGTGACCAAT
CAACTAGCGCGAAAAGTAGAGACTACTGACTTCCAGCGTGTTAAGGAAACCAGTAAACTT
TACGAGCGGATTTTGGGCAATACTGAAAATGGAATTGCGGATAAGGTTGCTCGCATGGCT
CTGACCAATCAACTGTTTCAGGTTGAGGTGGCTAAAAATGCCAGCAATGGTCAAAATTTG
TTGAAAGGCACAAAAGACTTCTCAGGGGGTTGGAAAAACAAGGGTGCAAATTGGAAAAAG
CACGCTGAAAAATACAAAGGTGTTGATGTCCTATTTAAAAATAATTCGTGGAATGGCGTT
GGACAAGAGATTGATGCAAAAATTGGTGAAGTCTATACATTCAGCTTATGGATGAAGAGC
GACTGGAAGAATGATACAGTAAATTTCTATGTAAATAGAAATGGATCTGTTGAGAAAGGT
TGGGGTGTTCCATCTGAAACATCGGTCGCTATAACAAGTGAATGGAAACGTTACTCATTT
GCCTTCAAAATTACTGTGGACGGCTTCATCTTTCCTCGTGTAGAACGACTTAATCAAAAT
ACAAATCTATATATTGCAGGTCTTAAACTTGAAAAAGGATCGTATGCAACACCGTACACC
GAAGCTCCTGAAGACACGGACGAAGCGATTCGCTCTGTTCAAAGCCAACTAACTGGCTCA
TGGGCAGTTCAAAACATCAACTCGGCTGGAGATATCATCTCTGGAATCAATCTTGGCGCC
AATGGACATAACCGCTTTGTTGGGAAATTGACCCACATCACTGGAGAGACCCTGATTGAC
AGAGCAGTCATCAAGTCTGCCATGGTTGATAAGCTCAAAACGGCCAATTTTGAAGCTGGT
TCGGTCACGACTACGATATTAGACGCTGAAGCGGTCACGGCTGATAAAGTGAGATTTGAT
GCTGCGTTTATTAGAAAAATGACTGCAAATGACGCTTTTATTGACCAACTGACATCTAAA
CGTATCTTCTCTACTAAGGTTGAGTCCGTCATTTCTAGTTCAACCTTCCTAGAAGCCTAT
CAAGGCCGAATCGGTGGATTCACTATTGGGCGTTTTGCTCAAGGAAGAGGTCGCTGGATT
TCTGGTATCAACCAATTCTCAGTTGGCATGGGGAATGGTGAAGGAGGAAGCTATAATGGC
GAAAATACCGCATTTTGGGCGAACTGGGGTCACAGTTGGAACTCTCCTGGCCCCAATGCT
TGGTATGTAACAACATCAGGAAATATGTATTGCCGAAACGGAGCAGATTTCCACGGGAAG
GTTGACTTTTCGAATTCATCGAGAGCAAACTTTTATGGGAATACTACTTTTTCTCGTTCT
CCTGTGTTTTCAAATGGTATCGAACTTGGAAGTAAAGATGTGCTTGGTGATGGCTGGAAT
CCCAAAGGAGGAAGGAATGCGGTTGTTTGGTGGAATCAGGTCGGTAGCGGTAGCGTGAAG
TATTGGATGGAACAAAAATCAGACAGACGCTTAAAAGAGAACATCACAGATACAGCTGTG
AAAGCCTTGGATAAAATCAACAGATTAAGAATGGTTGCATTTGATTTCATCGAAAATAAG
AAACATGAGGAGATTGGTCTAATAGCTCAAGAGGCTGAAACCATCGTTCCAAGAATTGTC
TCACGAGATCCTGAGAATCCAGATGGCTATCTGCATATTGACTATACCGCTTTAGTTCCT
TACTTAATCAAGGCTATTCAAGAATTAAATCAAAAAATAGAAAAAATGGAGAAAACAATA
GCATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN034183_00580 [new locus tag: SPN034183_RS12400 ]
- symbol: SPN034183_00580
- description: pblB
- length: 2101
- theoretical pI: 9.18292
- theoretical MW: 233449
- GRAVY: -0.585864
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage minor structural protein, N-terminal region (TIGR01665; HMM-score: 75.5)
- TheSEED:
- PFAM: no clan defined Peptidase_S74; Chaperone of endosialidase (PF13884; HMM-score: 49.1)and 5 moreBaculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 28.7)RPA_interact_M; Replication protein A interacting middle (PF14767; HMM-score: 21)DUF1497; Protein of unknown function (DUF1497) (PF07384; HMM-score: 20.5)HTH (CL0123) PuR_N; Bacterial purine repressor, N-terminal (PF09182; HMM-score: 17)HTH_27; Winged helix DNA-binding domain (PF13463; HMM-score: 12.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.11
- Cellwall Score: 9.25
- Extracellular Score: 0.63
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004105
- TAT(Tat/SPI): 0.000683
- LIPO(Sec/SPII): 0.000511
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP31768 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MALSRMVQNTKTALGDFSFNSDIQDRRTFNTTETETLYSVLLDGKHSIVGTWEGELVRDNFAMTVKKSRGENRGVVITTHKNLKDYQRTKNSQNVVTRIHAKSTFKPEGAEKETTIRVTVDSPLINSYPYINEKEYENNNAKTVEELQKWAQSKFSNEGIDKVSDAIKIEAYELDGQVVHMGDTVNLKSWKHNVDAFKKAIAYEFDALKEEYISLTFDDKAGIGGSRASGGLSSAADAILGVTESAQEIALEKALQNADLDFDHKAGLLRQEISDDIELAKARAEEVKRELSDTINQRFNSFDNGPLKETKRKAEEALRNAGASSSLAQESKRIGLDSVARLEAFKSQTTSAQTALSGDLDALKRTIANDIRPKQAQAEAEIAKQVEALSRTKNELAGASTLLAQEAKRIELDSVARLEAFKSQTTSAQTALSGDLDALKRTIANDIRPKQAQAEAEIAKQVEALSRTKNELAGASTLLAQEAKRIELDSVARLEAFKSQTTSAQTALSGDLDALKRTIVNDIRPKQAQAEAEIAKQVEALSRTKNELAGVKSAQATYKETTTRRLSELTNLANGKASKSELTQTAEELSSKIASVQASGRNLFLNSLFKQDIPKTGIWTTSTYTATIDSESKYLGHKALKIIGLNPSGRDGGNPKVTYPALGQFGKVIPGSTTNQDVTISFYAKANKNGIMLRSRLGNIGYKTGNVTLSTEIKRYAVHIPKGWTNESKRTTNEWLFNFNQEGTVWIWMPKFEISDVDTSYSEAPEDIEGQISTVESTFKQRANSLEAGVSRLTEGLRTKADISSLNVTAENIRQSVKSLETDTQNKLNQKLSQAEFEVRAGSIRQEILNATKDKADKTLVVSEAGKLREEFSKMKVGGRNLWIKSKTVGAVIEKLPENHVTGQKECYRLENNSTLTFNLEPDFSSRLYQKVTFSAWIKYENVVQGRNFWNVFNCFKHYLFRKNSETGVQSGPDYDTLGRYKGSADWKYITFTYDYSEKTNFDQLKTLLRFNLEGATSGTAWVTGIKVEIGSVATDWSPAPEDADGLITEAKATFERTAQGLRTDLSAITEGLRTKVDISALNVTAENIRQSVKSLETDTQNKLNQKLSQAEFEVRAGSIRQEILNATKDKADKTLVVSEAGKLREEFSKMKVGGRNLWIKSKTVGAVIEKLPENHVTGQKECYRLENNSTLTFNLEPDFSSRLYQKVTFSAWIKYENVVQGRNFWNVFNCFKHYLFRKNSETGVQSGPDYDTLGRYKGSADWKYITFTYDYSEKTNFDQLKTSLRFNLEGATSGTAWVTGIKVEIGSVATDWSPAPEDADGLITEAKATFERTAQGLRTDLSAIQEYVNKDGQRQEALQRYTREESTRQATAVRELVNRDFVGKATYQEDVKGINQRIEAVKTSANKDIASQIASYRQSVDGKFTDISSQITTYKQDVGGQISGLSNRLTSSEQGTTTQISNLSNRINSNKQGTDNQISNLKTQVATNKDNAERQMGRISDQVSANKANADSQFANVTNQLARKVETTDFQRVKETSKLYERILGNTENGIADKVARMALTNQLFQVEVAKNASNGQNLLKGTKDFSGGWKNKGANWKKHAEKYKGVDVLFKNNSWNGVGQEIDAKIGEVYTFSLWMKSDWKNDTVNFYVNRNGSVEKGWGVPSETSVAITSEWKRYSFAFKITVDGFIFPRVERLNQNTNLYIAGLKLEKGSYATPYTEAPEDTDEAIRSVQSQLTGSWAVQNINSAGDIISGINLGANGHNRFVGKLTHITGETLIDRAVIKSAMVDKLKTANFEAGSVTTTILDAEAVTADKVRFDAAFIRKMTANDAFIDQLTSKRIFSTKVESVISSSTFLEAYQGRIGGFTIGRFAQGRGRWISGINQFSVGMGNGEGGSYNGENTAFWANWGHSWNSPGPNAWYVTTSGNMYCRNGADFHGKVDFSNSSRANFYGNTTFSRSPVFSNGIELGSKDVLGDGWNPKGGRNAVVWWNQVGSGSVKYWMEQKSDRRLKENITDTAVKALDKINRLRMVAFDFIENKKHEEIGLIAQEAETIVPRIVSRDPENPDGYLHIDYTALVPYLIKAIQELNQKIEKMEKTIA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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