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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN034183
- locus tag: SPN034183_RS05550 [old locus tag: SPN034183_10280 ]
- pan locus tag?: PNEUPAN002270000
- symbol: glgD
- pan gene symbol?: glgD
- synonym:
- product: glucose-1-phosphate adenylyltransferase subunit GlgD
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN034183_RS05550 [old locus tag: SPN034183_10280 ]
- symbol: glgD
- product: glucose-1-phosphate adenylyltransferase subunit GlgD
- replicon: chromosome
- strand: +
- coordinates: 1038233..1039372
- length: 1140
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_021028 (1038233..1039372) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1007 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1081ATGAAGATTGATAAATATTCTGCCATTTTAGGAAATACAGTTGGTTTTCACAATATGTCG
ACATTGACGGACCACCGTCCAGTAGCAAGTTTGCCATTTGGTGGGAAATATCGTTTGATT
GACTTCCCGCTTTCAAGCCTTGCTAATGCAGGTGTTCGTAGTGTCTTTGGTATTTTCCAG
CAGGATAATATCAGCTCAGTATTTGACCATATTCGTTCAGGACGCGAGTGGGGCTTATCA
ACCCTTCTTAGTCATTACTATCTAGGAATTTACAATACCCGTGTAGAAAGTAGTACAGTT
GGAAAAGAATACTACCAACAGCTTCTTACTTATTTGAAACGTTCTGGCTCAAACCAAACG
GTTGCCCTCAACTGCGATGTTCTTATTAACATTGATTTGAACCAAGTTTTCCACCTACAT
AGTACAACAAAAGAGCCTATCACTGTAGTTTATAAAAAACTAGCTAAGAAAGATATTTCA
GAAGTAAATGCAATCTTGGATGTAGATGAAACAGACCATGTTCTTTCTCATAAACTCTTT
GATAGCAAGTCAACAGCTGAAACGTTCAATATGTCTACAGATATCTTTGTCGTTGATACA
CCTTGGTTGATTGAACACTTGGAAGAAGAAGCTAAAAAAGAACATCCAAAGAAATTGCGC
TATGTTTTACGGGATTTGGCTGTAAAAGAGGGAGCTTTCGCCTACGAGTACACGGGCTAT
CTAGCCAATATTCACTCTGTTAAATCTTATTATCAAGCGAATATCGATATGCTTGAATCA
CAAAAATTCTATTCTCTTTTCTCACCAAACCAAAAGATTTATACAAAGGTCAAAAACGAA
GAGCCAACTTACTATGCTAATACATCTAAGGTAAGCACTTCTCAGTTTGCCTCTGGTAGT
ATTATTAAAGGTCAAGTAGCTAATTCTGTTCTATCACGTAATATTCATGTCCATAAGGAT
AGCTTGGTTAAAGATAGCCTGCTCTTCCCTCGTGTTGTTATTGGAGAAGGGGCTCAGGTC
GAATATGCTATCTTGGACAAAGGGGTTGAAGTTGAGCCTGGTGTTGTGATTCGAGGAACT
GCAGAACATCCAGTTGTGGTTAAGAAAGGTGCTAAAGTAACAGAGGATATTCATTCATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN034183_RS05550 [old locus tag: SPN034183_10280 ]
- symbol: GlgD
- description: glucose-1-phosphate adenylyltransferase subunit GlgD
- length: 379
- theoretical pI: 7.54503
- theoretical MW: 42579
- GRAVY: -0.239314
⊟Function[edit | edit source]
- reaction: EC 2.7.7.27? ExPASyGlucose-1-phosphate adenylyltransferase ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose
- TIGRFAM: Energy metabolism Biosynthesis and degradation of polysaccharides glucose-1-phosphate adenylyltransferase, GlgD subunit (TIGR02092; EC 2.7.7.27; HMM-score: 510.8)and 2 moreEnergy metabolism Biosynthesis and degradation of polysaccharides glucose-1-phosphate adenylyltransferase (TIGR02091; EC 2.7.7.27; HMM-score: 167.5)glucose-1-phosphate thymidylyltransferase (TIGR01208; EC 2.7.7.24; HMM-score: 15)
- TheSEED: see SPN034183_10280
- PFAM: GT-A (CL0110) NTP_transferase; Nucleotidyl transferase (PF00483; HMM-score: 39.5)and 3 moreno clan defined Tropomodulin; Tropomodulin (PF03250; HMM-score: 13.2)HEXAPEP (CL0536) Hexapep; Bacterial transferase hexapeptide (six repeats) (PF00132; HMM-score: 13.1)Pec_lyase-like (CL0268) Bactofilin; Polymer-forming cytoskeletal (PF04519; HMM-score: 11.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008951
- TAT(Tat/SPI): 0.000759
- LIPO(Sec/SPII): 0.001076
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000687073 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKIDKYSAILGNTVGFHNMSTLTDHRPVASLPFGGKYRLIDFPLSSLANAGVRSVFGIFQQDNISSVFDHIRSGREWGLSTLLSHYYLGIYNTRVESSTVGKEYYQQLLTYLKRSGSNQTVALNCDVLINIDLNQVFHLHSTTKEPITVVYKKLAKKDISEVNAILDVDETDHVLSHKLFDSKSTAETFNMSTDIFVVDTPWLIEHLEEEAKKEHPKKLRYVLRDLAVKEGAFAYEYTGYLANIHSVKSYYQANIDMLESQKFYSLFSPNQKIYTKVKNEEPTYYANTSKVSTSQFASGSIIKGQVANSVLSRNIHVHKDSLVKDSLLFPRVVIGEGAQVEYAILDKGVEVEPGVVIRGTAEHPVVVKKGAKVTEDIHS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1007 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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