From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F03300 [new locus tag: SPN23F_RS01700 ]
  • pan locus tag?: PNEUPAN000566000
  • symbol: wchY
  • pan gene symbol?: wchY
  • synonym:
  • product: putative glycerol-2-phosphate dehydrogenase WchY

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F03300 [new locus tag: SPN23F_RS01700 ]
  • symbol: wchY
  • product: putative glycerol-2-phosphate dehydrogenase WchY
  • replicon: chromosome
  • strand: +
  • coordinates: 316014..317042
  • length: 1029
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    TTGAAAAATAATGATTTAAAGATAGGAAGTGGAGCTATTCATCAAATTTCCGCTACACTT
    TCTCAAAATAGTATTTCGGGAAAGATTTTATATTGTGCTGATCCAGTTGTCGATGACTTG
    TACGGTTCGATAGTACGTTCACAAATAGAGGAAATTGGTCGGGTAAAGGAAGAAAGTTGC
    AATTATAATACTATTGCTTATGCGATGAATATAGCAGAACGGGCTATTGCCACAGATATT
    GACTGTATTGTGGGAATGGGAGGAGGTCGTGTTTTAGATGTCTGCAAGTATGCATCTTTT
    ATTTCGAAACGTCCTTACCTATCGATTCCGACAACAGCAGCAAATGATGGCATTGCTTCC
    CCAGTTGCTGTTTTGAAAAGGCAGGATGATAGACCAAAAAGCTTAGGGGCGGCTATCCCC
    TCAATGACACTAATTGATATTGATGTTATTGCATCAGGACCTATACAAAATATAAAAGCT
    GGTATCGGTGATACAATATCCAATTACACTGCATTGAAAGATTGGGAGTTGGCAGTTGAG
    CGAGGGAAAGATGAGATGCATGGTTTTGCATATCTAATGTCGCAAAATTCTTTAGATGCT
    TTAATGAAAACGAAGTATAATTCTATTACCCCTGATTTTATTGAAGTTTTGGTAAACTCT
    TTAGTTTTATCAGGCATTGCAATGGATTTTGCGGGAAGTAGTAGACCTGTCAGTGGGTCA
    GAGCACTTATTTAGTCATGCATTAGATTACTATGGTTCTACAAGGAATCTTCATGGAATT
    CAGGTTGCATTAGGTACAGTCGCAGTTTTGAAATTAATTGAAAATTCTGTTGATACTGTA
    GTGGATTACTTGCAAAGATTTGAGGTTCATATTAACCCGAAACTTTTGGGGATAGATGAA
    GAGTTGTTTATTTATTGTATGCAACATGCTACAAAAATGAGAAGTAATCGCTATACCTAT
    CTGCATGAAGTTGATCTTAGCACAGATAGATTGAAACAAATATATAAGGAACTCATAAGC
    GAGTTGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1029

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F03300 [new locus tag: SPN23F_RS01700 ]
  • symbol: WchY
  • description: putative glycerol-2-phosphate dehydrogenase WchY
  • length: 342
  • theoretical pI: 5.39342
  • theoretical MW: 37595.8
  • GRAVY: -0.0154971

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Aromatic amino acid family 3-dehydroquinate synthase (TIGR01357; EC 4.2.3.4; HMM-score: 23.6)
    and 1 more
    phosphonate metabolism-associated iron-containing alcohol dehydrogenase (TIGR03405; HMM-score: 11.6)
  • TheSEED  :
    • Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)
    Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid and Glycerophospholipid Metabolism in Bacteria  Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)
    and 1 more
    Respiration Electron donating reactions Respiratory dehydrogenases 1  Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)
  • PFAM:
    DHQS (CL0224) Fe-ADH_2; Iron-containing alcohol dehydrogenase (PF13685; HMM-score: 202.9)
    and 2 more
    Fe-ADH; Iron-containing alcohol dehydrogenase (PF00465; HMM-score: 66.3)
    DHQ_synthase; 3-dehydroquinate synthase (PF01761; HMM-score: 29.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9556
    • Cytoplasmic Membrane Score: 0.0182
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0257
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.073482
    • TAT(Tat/SPI): 0.003229
    • LIPO(Sec/SPII): 0.022524
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR68186 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKNNDLKIGSGAIHQISATLSQNSISGKILYCADPVVDDLYGSIVRSQIEEIGRVKEESCNYNTIAYAMNIAERAIATDIDCIVGMGGGRVLDVCKYASFISKRPYLSIPTTAANDGIASPVAVLKRQDDRPKSLGAAIPSMTLIDIDVIASGPIQNIKAGIGDTISNYTALKDWELAVERGKDEMHGFAYLMSQNSLDALMKTKYNSITPDFIEVLVNSLVLSGIAMDFAGSSRPVSGSEHLFSHALDYYGSTRNLHGIQVALGTVAVLKLIENSVDTVVDYLQRFEVHINPKLLGIDEELFIYCMQHATKMRSNRYTYLHEVDLSTDRLKQIYKELISEL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN23F03300&oldid=55787"