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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F06730 [new locus tag: SPN23F_RS03435 ]
  • pan locus tag?: PNEUPAN001712000
  • symbol: SPN23F06730
  • pan gene symbol?: livH
  • synonym:
  • product: branched-chain amino acid transport system permease protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F06730 [new locus tag: SPN23F_RS03435 ]
  • symbol: SPN23F06730
  • product: branched-chain amino acid transport system permease protein
  • replicon: chromosome
  • strand: +
  • coordinates: 660022..660891
  • length: 870
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGCTCCAACAACTCGTAAATGGTTTGATTCTAGGTAGTGTTTACGCGCTGTTAGCCCTA
    GGATATACCATGGTTTACGGAATTATCAAGCTCATCAACTTCGCCCATGGTGATATTTAT
    ATGATGGGAGCCTTTATCGGTTATTTCTTGATCAATTCTTTCCAAATGAATTTCTTTGTA
    GCGCTTATTGTAGCTATGCTAGCGACAGCTATTCTTGGTGTCGTGATTGAGTTTCTTGCT
    TACCGACCTTTGCGCCACTCTACTCGTATTGCTGTTTTGATTACGGCTATTGGGGTTTCT
    TTCCTATTGGAGTATGGAATGGTCTATCTGGTTGGTGCCAATACCCGTGCCTTCCCTCAA
    GCGATTCAAACAGTTCGATATGATTTGGGACCAATTAGCTTAACAAATGTGCAGTTAATG
    ATTTTGGCCATTTCCTTGATTTTGATGATTTTGTTACAAGTCATTGTCCAAAAGACTAAG
    ATGGGGAAAGCCATGCGTGCAGTATCAGTAGATAGCGACGCGGCACAATTGATGGGGATC
    AATGTAAACCGTACGATTAGCTTTACCTTCGCTTTGGGTTCTGCTCTTGCGGGTGCGGCT
    GGTGTTCTGATTGCTCTTTATTATAACTCTCTTGAGCCTTTGATGGGGGTTACTCCAGGT
    CTTAAATCTTTCGTTGCCGCAGTACTTGGTGGTATCGGAATTATTCCTGGTGCGGCTCTT
    GGTGGCTTTGTGATTGGTCTATTGGAAACCTTTGCGACAGCCTTTGGGATGTCAGATTTC
    CGTGATGCCATTGTTTATGGAATCTTGTTGTTGATCTTGATTGTCCGCCCAGCTGGTATC
    CTTGGTAAGAATGTGAAAGAGAAGGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    870

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F06730 [new locus tag: SPN23F_RS03435 ]
  • symbol: SPN23F06730
  • description: branched-chain amino acid transport system permease protein
  • length: 289
  • theoretical pI: 9.83867
  • theoretical MW: 30850
  • GRAVY: 1.07336

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, permease protein UrtB (TIGR03409; HMM-score: 150.6)
    and 4 more
    urea ABC transporter, permease protein UrtB (TIGR03622; HMM-score: 100)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, permease protein UrtC (TIGR03408; HMM-score: 35.9)
    urea ABC transporter, permease protein UrtC (TIGR03727; HMM-score: 28.5)
    Metabolism Energy metabolism Electron transport cyd operon protein YbgT (TIGR02106; HMM-score: 13.2)
  • TheSEED  :
    • High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
    Membrane Transport ABC transporters ABC transporter branched-chain amino acid (TC 3.A.1.4.1)  High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
  • PFAM:
    Membrane_trans (CL0142) BPD_transp_2; Branched-chain amino acid transport system / permease component (PF02653; HMM-score: 176)
    and 3 more
    FecCD; FecCD transport family (PF01032; HMM-score: 28.5)
    no clan defined WSS_VP; White spot syndrome virus structural envelope protein VP (PF12175; HMM-score: 10.1)
    COX14; Cytochrome oxidase c assembly (PF14880; HMM-score: 6.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003755
    • TAT(Tat/SPI): 0.000209
    • LIPO(Sec/SPII): 0.020819
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR68519 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDIYMMGAFIGYFLINSFQMNFFVALIVAMLATAILGVVIEFLAYRPLRHSTRIAVLITAIGVSFLLEYGMVYLVGANTRAFPQAIQTVRYDLGPISLTNVQLMILAISLILMILLQVIVQKTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLIALYYNSLEPLMGVTPGLKSFVAAVLGGIGIIPGAALGGFVIGLLETFATAFGMSDFRDAIVYGILLLILIVRPAGILGKNVKEKV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (activation (repression)) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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