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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 06-FEB-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F16820 [new locus tag: SPN23F_RS08485 ]
- pan locus tag?: PNEUPAN003079000
- symbol: SPN23F16820
- pan gene symbol?: satB
- synonym:
- product: putative transport system permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F16820 [new locus tag: SPN23F_RS08485 ]
- symbol: SPN23F16820
- product: putative transport system permease
- replicon: chromosome
- strand: -
- coordinates: 1620486..1621382
- length: 897
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FM211187 (1620486..1621382) NCBI
- BioCyc: see SPN23F_RS08485
- MicrobesOnline: 5831499 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1494 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841GTGCCGACTGTGAAAGTCAATAAAATCCGTATGCGGGAAACAGTGATTTCCTATGCTTTC
CTAGCACCAGTGTTGTTCTTCTTTGTCATCTTTGTATTGGCTCCAATGATTATGGGCTTT
ATTACAAGTTTCTTTAACTACTCTATGACTAGCTTTGAATTTGTGGGCTTAGATAACTAT
ATCCGTATGTTTAAAGATCCTGTCTTTACAAAATCTTTGATTAACACAGTTATTTTGGTT
ATTGGATCTGTGCCAGTTGTTGTTCTATTCTCACTCTTTGTAGCGTCACAGACCTACCAT
CAAAATGCTATCGCTAGATCATTCTATCGTTTCGTATTCTTCCTTCCAGTTGTTACAGGT
AGTGTTGCCGTAACAGTTGTATGGAAATGGATTTATGACCCACTATCAGGGATTCTAAAC
TTTGTCCTTAAGTCCAGCCACATCATCAGCCAAAACATTTCTTGGTTGGGAGATAAAAAC
TGGGCATTGATGGCGATTATGATTATTCTCTTGACCACTTCAGTTGGTCAGCCCATCATC
CTTTATATCGCTGCCATGGGGAATATTGACAATTCACTGGTTGAAGCGGCGCGTGTTGAT
GGTGCAACTGAGTTTCAAGTTTTTTGGAAGATTAAATGGCCAAGCCTTCTTCCAACAACT
CTTTATATTGCAATCATCACAACAATTAACTCATTCCAGTGTTTTGCCTTGATTCAGCTT
TTGACATCTGGTGGTCCAAACTACTCAACAAGTACCTTGATGTACTACCTTTACGAAAAA
GCCTTCCAATTGACAGAATACGGCTATGCCAACACAATTGGTGTCTTCTTGGCAATCATG
ATTGCTATCGTAAGCTTTGTTCAATTTAAAGTACTTGGAAACGACGTAGAATACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F16820 [new locus tag: SPN23F_RS08485 ]
- symbol: SPN23F16820
- description: putative transport system permease
- length: 298
- theoretical pI: 9.06668
- theoretical MW: 33673.7
- GRAVY: 0.79396
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 34.5)Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 29.3)Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 28.9)and 5 moreNifC-like ABC-type porter (TIGR01581; HMM-score: 25.3)Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 21.3)Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 18.5)2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 17.5)choline ABC transporter, permease protein (TIGR03416; HMM-score: 16.6)
- TheSEED :
- ABC transporter, predicted N-acetylneuraminate transport system permease protein 1
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 52.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006686
- TAT(Tat/SPI): 0.000551
- LIPO(Sec/SPII): 0.005515
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CAR69454 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MPTVKVNKIRMRETVISYAFLAPVLFFFVIFVLAPMIMGFITSFFNYSMTSFEFVGLDNYIRMFKDPVFTKSLINTVILVIGSVPVVVLFSLFVASQTYHQNAIARSFYRFVFFLPVVTGSVAVTVVWKWIYDPLSGILNFVLKSSHIISQNISWLGDKNWALMAIMIILLTTSVGQPIILYIAAMGNIDNSLVEAARVDGATEFQVFWKIKWPSLLPTTLYIAIITTINSFQCFALIQLLTSGGPNYSTSTLMYYLYEKAFQLTEYGYANTIGVFLAIMIAIVSFVQFKVLGNDVEY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: NanR* (repression) regulon
NanR* (TF) important in Sialic acid utilization; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1494 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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