From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F_RS01670 [old locus tags: SPN23F03230 SPN23F_03230 ]
  • pan locus tag?: PNEUPAN000560000
  • symbol: cps2T
  • pan gene symbol?: cps2T
  • synonym:
  • product: beta 1-4 rhamnosyltransferase Cps2T

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F_RS01670 [old locus tags: SPN23F03230 SPN23F_03230 ]
  • symbol: cps2T
  • product: beta 1-4 rhamnosyltransferase Cps2T
  • replicon: chromosome
  • strand: +
  • coordinates: 308550..309728
  • length: 1179
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAAAAGTCAGTTTATATCATTGGTTCAAAAGGAATTCCTGCTAAGTATGGAGGATTT
    GAAACTTTTGTTGAGAAATTAACAGCCTTCCAACAAGATAAGGCTATCCAATATTATGTG
    GCTTGTATGCGTGAAAACTCTGCAAAATCAGGGACTACTGAGGATGTTTTTGAACATAAT
    GGTGCTATCTGTTATAACGTCGATGTTCCTAATATTGGTCCAGCGCGAGCTATAGCGTAT
    GATATCGCTGCAATTAACAGAGCTATTGAGATTGCCAAAGAAAATAAGGATGAAGATCCA
    ATCTTCTATATTTTAGCTTGTCGAATTGGTCCGTTCATCCATGGAATTAAGAAAAAAATC
    CAGGAGATAGGTGGGACTCTTCTAGTTAATCCAGATGGCCACGAGTGGTTGCGAGCTAAG
    TGGAGTGCTCCTGTTCGTCGCTACTGGAAAATTTCTGAAGGTCTTATGGTCAAACATGCA
    GATCTTTTAGTGTGTGATAGTAAAAATATTGAAAAATATATCCAAGAAGATTATAAACAG
    TATCAACCTAAGACAACCTATATCGCTTATGGGACTGATACAACACGCTCCGTATTAAAG
    AGTAGTGATGAAAAAGTACGTTCTTGGTTCAAAGAGAAGAATGTTTCTGAGAACGAGTAT
    TATCTAGTTGTAGGACGTTTTGTACCAGAAAACAACTATGAATCTATGATTCGTGGCTTT
    TTGGCGTCTAACTCTAAGAAGGACTTTGTCTTAATCACAAATGTAGAACAGAATAAATTT
    TATAATCAGTTGTTGGCAAAAACTGGTTTTGATAAGGACCCACGAGTAAAATTTGTAGGT
    ACAGTCTATGAGCAAGAGCTTCTTAAATATATTCGTGAAAACGCCTTTGCTTACTTCCAC
    GGGCATGAAGTTGGTGGAACCAATCCTTCGCTTTTAGAAGCTCTGGCATCAACTAAACTG
    AATTTATTGCTAGATGTTGGCTTTAACCGAGAAGTTGCTGAAGATGGTGCCATTTACTGG
    AAGAAAGATAATCTTCATGAGATTATTGAAACGAGTGAACAAAAAACACAAAAAGAGATT
    GATGAGAAAGATATACTTTCAATAAAACAAGTGACGGAGCGGTTCTCTTGGGAATTGATA
    GTTAATGAGTATGAGAAACTTTTTTTATGTGAGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1179

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F_RS01670 [old locus tags: SPN23F03230 SPN23F_03230 ]
  • symbol: Cps2T
  • description: beta 1-4 rhamnosyltransferase Cps2T
  • length: 392
  • theoretical pI: 6.63885
  • theoretical MW: 45128.1
  • GRAVY: -0.450255

⊟Function[edit | edit source]

  • TIGRFAM:
    glycosyltransferase, GG-Bacteroidales peptide system (TIGR04157; EC 2.4.1.-; HMM-score: 25.6)
    sugar transferase, PEP-CTERM/EpsH1 system associated (TIGR03088; HMM-score: 22.9)
    and 2 more
    Unknown function Enzymes of unknown specificity glycosyltransferase, MSMEG_0565 family (TIGR04047; HMM-score: 17.7)
    PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family (TIGR04063; EC 2.4.-.-; HMM-score: 12.8)
  • TheSEED: see SPN23F03230
  • PFAM:
    GT-B (CL0113) DUF1972; Domain of unknown function (DUF1972) (PF09314; HMM-score: 298.5)
    and 3 more
    Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 28.8)
    Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 19.1)
    Cyclophil-like (CL0475) MupG_C; 6-phospho-N-acetylmuramidase, C-terminal (PF05913; HMM-score: 15.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4774
    • Cytoplasmic Membrane Score: 0.4582
    • Cell wall & surface Score: 0.0016
    • Extracellular Score: 0.0628
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015392
    • TAT(Tat/SPI): 0.000578
    • LIPO(Sec/SPII): 0.002157
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000750326 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKSVYIIGSKGIPAKYGGFETFVEKLTAFQQDKAIQYYVACMRENSAKSGTTEDVFEHNGAICYNVDVPNIGPARAIAYDIAAINRAIEIAKENKDEDPIFYILACRIGPFIHGIKKKIQEIGGTLLVNPDGHEWLRAKWSAPVRRYWKISEGLMVKHADLLVCDSKNIEKYIQEDYKQYQPKTTYIAYGTDTTRSVLKSSDEKVRSWFKEKNVSENEYYLVVGRFVPENNYESMIRGFLASNSKKDFVLITNVEQNKFYNQLLAKTGFDKDPRVKFVGTVYEQELLKYIRENAFAYFHGHEVGGTNPSLLEALASTKLNLLLDVGFNREVAEDGAIYWKKDNLHEIIETSEQKTQKEIDEKDILSIKQVTERFSWELIVNEYEKLFLCEK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN23F_RS01670&oldid=53518"