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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 11-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS04435 [old locus tags: SPN23F08680 SPN23F_08680 ]
- pan locus tag?: PNEUPAN001934000
- symbol: cvfB
- pan gene symbol?: cvfB
- synonym:
- product: RNA-binding virulence regulatory protein CvfB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS04435 [old locus tags: SPN23F08680 SPN23F_08680 ]
- symbol: cvfB
- product: RNA-binding virulence regulatory protein CvfB
- replicon: chromosome
- strand: +
- coordinates: 848448..849302
- length: 855
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (848448..849302) NCBI
- BioCyc: SPN23F_RS04435 BioCyc
- MicrobesOnline: see SPN23F08680
- PneumoBrowse for strain D39V: SPV_0836 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGAATACAAATCTTGCAAGTTTTATCGTTGGACTGATCATCGATGAAAATGACCGTTTT
TACTTTGTGCAAAAGGATGGTCAAACCTATGCTCTTGCTAAGGAAGAGGGCCAACATACA
GTAGGGGATACGGTCAAAGGTTTTGCATACACGGATATGAAGCAAAAACTCCGCCTGACA
ACCTTAGAAGTGACTGCCACTCAGGACCAATTTGGTTGGGGACGTGTCACAGAGGTTCGT
AAGGACTTGGGTGTCTTTGTGGATACAGGCCTTCCTGACAAGGAAATCGTTGTGTCACTC
GATATTCTCCCTGTGCTCAAGGAACTCTGGCCTAAGAAGGGCGACCAACTCTACATCCGT
CTTGAAGTGGATAAGAAAGACCGTATCTGGGGCCTCTTGGCTTATCAAGAAGACTTCCAA
CGTCTCGCTCGTCCTGCCTACAATAACATGCAGAACCAAAACTGGCCAGCCATTGTTTAC
CGTCTCAAGCTGTCAGGAACTTTTGTTTACCTACCAGAAAATAATATGCTTGGTTTTATT
CATCCTAGCGAGCGTTACGCAGAGCCACGTTTGGGGCAAGTATTAGATGCGCGCGTTATT
GGTTTCCGTGAAGTGGACCGCACTCTGAACCTCTCCCTCAAACCACGCTCCTTTGAAATG
TTGGAAAACGATGCTCAGATGATTTTGACTTATTTGGAAAGCAATGGCGGTTTCATGACC
TTAAATGACAAGTCATCTCCAGACGACATCAAGGCAACCTTTGGCATTTCTAAAGGTCAG
TTCAAGAAAGCTTTAGGTGGTCTTATGAAGGCTGGTAAAATCAAGCAAGACCAGTTTGGG
ACAGAGTTGATTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS04435 [old locus tags: SPN23F08680 SPN23F_08680 ]
- symbol: CvfB
- description: RNA-binding virulence regulatory protein CvfB
- length: 284
- theoretical pI: 6.57661
- theoretical MW: 32388.9
- GRAVY: -0.36338
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPN23F08680
- PFAM: HTH (CL0123) CvfB_WH; CvfB-like winged helix domain (PF17783; HMM-score: 85.9)and 3 moreOB (CL0021) S1_2; S1 domain (PF13509; HMM-score: 41.2)S1; S1 RNA binding domain (PF00575; HMM-score: 16.8)no clan defined DUF5818; Protein of unknown function (DUF5818) (PF19135; HMM-score: 14.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9928
- Cytoplasmic Membrane Score: 0.002
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0048
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015631
- TAT(Tat/SPI): 0.00103
- LIPO(Sec/SPII): 0.001352
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001095450 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNTNLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQHTVGDTVKGFAYTDMKQKLRLTTLEVTATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPVLKELWPKKGDQLYIRLEVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQFGTELI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: trmFO > pyrH > frr > cvfB > SPN23F_RS04440 > SPN23F_RS04445
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0836 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]