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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 11-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS04840 [old locus tags: SPN23F09500 SPN23F_09500 ]
- pan locus tag?: PNEUPAN002050000
- symbol: SPN23F_RS04840
- pan gene symbol?: —
- synonym:
- product: DUF1002 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS04840 [old locus tags: SPN23F09500 SPN23F_09500 ]
- symbol: SPN23F_RS04840
- product: DUF1002 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 919587..920561
- length: 975
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (919587..920561) NCBI
- BioCyc: SPN23F_RS04840 BioCyc
- MicrobesOnline: see SPN23F09500
- PneumoBrowse for strain D39V: SPV_0913 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGAGAAAGAAACTCTTTCTGACTAGTGCTGCGGTCTTGTGGGCAGTAACAGCTATGAAT
AGCGTCCATGCAGCAACAGATGTTCAAAAAGTTATCGATGAAACCTATGTCCAACCTGAA
TATGTCCTAGGTTCCTCCCTATCTGAAGACCAAAAAAATCAAACTCTTAAAAAACTGGGC
TACAATGCCTCAACAGATACCAAAGAACTCAAGACCATGACACCTGATGTTTATTCTAAA
ATCATGAATGTGGCCAATGACTCTAGCTTACAGTTGTATTCATCAGCCAAGATTCAAAAG
CTAGGTGACAAATCGCCACTTGAGGTCAAGATTGAAACACCAGAAAATATCACTAAGGTG
ACTCAGGATATGTACCGAAACGCAGCAGTAACGCTGGGTATGGAACATGCCAAAATCACT
GTAGCAGCCCCTATTCCAGTTACAGGTGAGAGTGCTTTGGCTGGGATCTACTATTCGCTA
GAAGCTAATGGAGCCAAGGTGCCGCAAGCCAATAAAGATTTGGCTCAAGAAGAGCTAAAG
GCTTTGTCAGATATCAATGCTGAAAACAAGGACAAATCAGGCTATGATGCTAATAAATTA
AACGTTGCCCTAGCTGATATCAAGTCAGGACTCGCCAAAGCTAAAGAAAGCAAGGGAAAT
CTGACAGAAGAAGATGTACGCAAGATTGTTGAAGATACCTTAAAAAATTACAAACTTGAT
CAGGTCATAACAGGAAACCAGATCAATATCATCATCAATTTTGCCTTGAATCTCTCAAAG
AGTGATATCCTCAGCAATGCAGATTTCACTAAAACCCTAAATGACCTTAAACAAAGCATC
GTATCACAAGCTGGCGACAGTTTTAAAAATATCAACCTTAACTTTGATGCGGATAAGGCG
CTAGAGGACGGTGGTAACTTCTTAAGCTCCCTCTGGCAAGCCCTTGTCAACTTCTTCAAG
AGTTTTGGTTCTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS04840 [old locus tags: SPN23F09500 SPN23F_09500 ]
- symbol: SPN23F_RS04840
- description: DUF1002 domain-containing protein
- length: 324
- theoretical pI: 5.26786
- theoretical MW: 35386.8
- GRAVY: -0.325617
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPN23F09500
- PFAM: no clan defined DUF1002; Protein of unknown function (DUF1002) (PF06207; HMM-score: 183.6)and 4 moreMinC_N; Septum formation inhibitor MinC, N-terminal domain (PF05209; HMM-score: 17.4)HTH (CL0123) B5; tRNA synthetase B5 domain (PF03484; HMM-score: 14.2)HTH_SUN2; SUN2 helix-turn-helix domain (PF18580; HMM-score: 12.3)no clan defined DUF3349; Protein of unknown function (DUF3349) (PF11829; HMM-score: 11)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.2034
- Cell wall & surface Score: 0.0146
- Extracellular Score: 0.7818
- SignalP: Signal peptide SP(Sec/SPI) length 24 aa
- SP(Sec/SPI): 0.997167
- TAT(Tat/SPI): 0.000402
- LIPO(Sec/SPII): 0.001968
- Cleavage Site: CS pos: 24-25. VHA-AT. Pr: 0.9854
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001227759 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MRKKLFLTSAAVLWAVTAMNSVHAATDVQKVIDETYVQPEYVLGSSLSEDQKNQTLKKLGYNASTDTKELKTMTPDVYSKIMNVANDSSLQLYSSAKIQKLGDKSPLEVKIETPENITKVTQDMYRNAAVTLGMEHAKITVAAPIPVTGESALAGIYYSLEANGAKVPQANKDLAQEELKALSDINAENKDKSGYDANKLNVALADIKSGLAKAKESKGNLTEEDVRKIVEDTLKNYKLDQVITGNQINIIINFALNLSKSDILSNADFTKTLNDLKQSIVSQAGDSFKNINLNFDADKALEDGGNFLSSLWQALVNFFKSFGS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPN23F_RS04800 > prfA > prmC > SPN23F_RS04815 > SPN23F_RS04820 > glyA > SPN23F_RS04830 > pmp23 > SPN23F_RS04840 > rlmD
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0913 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]