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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 11-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS05520 [old locus tags: SPN23F10870 SPN23F_10870 ]
- pan locus tag?: PNEUPAN002428000
- symbol: SPN23F_RS05520
- pan gene symbol?: lacF-2
- synonym:
- product: PTS lactose/cellobiose transporter subunit IIA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS05520 [old locus tags: SPN23F10870 SPN23F_10870 ]
- symbol: SPN23F_RS05520
- product: PTS lactose/cellobiose transporter subunit IIA
- replicon: chromosome
- strand: -
- coordinates: 1067125..1067442
- length: 318
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (1067125..1067442) NCBI
- BioCyc: SPN23F_RS05520 BioCyc
- MicrobesOnline: see SPN23F10870
- PneumoBrowse for strain D39V: SPV_1048 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGAATAGAGAAGAAGTAACATTGTTAGGTTTTGAAATCGTAGCCTATGCTGGCGATGCT
CGTTCAAAACTATTGGAAGCCTTGAAGGCTGCTGAAGCTGGTGATTTTGAAAAAGCGGAC
GCTCTGGTAGAGGAAGCTGGTAGCTGTATTGCAGAGGCTCACCACGCGCAAACAAGTCTA
TTGACTAAGGAAGCTTCTGGTGAGGACTTAGCGTATAGTGTGACCATGATGCATGGTCAA
GATCACTTGATGACAACTATCTTGTTAAAAGACCTAATGCACCATTTAATTGAACTTTAC
AAGAGAGGAGTTAAATAA60
120
180
240
300
318
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS05520 [old locus tags: SPN23F10870 SPN23F_10870 ]
- symbol: SPN23F_RS05520
- description: PTS lactose/cellobiose transporter subunit IIA
- length: 105
- theoretical pI: 4.91829
- theoretical MW: 11513.1
- GRAVY: -0.0742857
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose-specific IIa component (TIGR00823; EC 2.7.1.69; HMM-score: 159.4)and 1 moreUnknown function Enzymes of unknown specificity uncharacterized pyridoxal phosphate-dependent enzyme (TIGR01437; HMM-score: 14.5)
- TheSEED: see SPN23F10870
- PFAM: no clan defined PTS_IIA; PTS system, Lactose/Cellobiose specific IIA subunit (PF02255; HMM-score: 116)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9975
- Cytoplasmic Membrane Score: 0.0006
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0017
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.018708
- TAT(Tat/SPI): 0.006037
- LIPO(Sec/SPII): 0.00369
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001078331 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNREEVTLLGFEIVAYAGDARSKLLEALKAAEAGDFEKADALVEEAGSCIAEAHHAQTSLLTKEASGEDLAYSVTMMHGQDHLMTTILLKDLMHHLIELYKRGVK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CcpA see SPN23F10870
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1048 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]