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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS09625 [old locus tags: SPN23F19080 SPN23F_19080 ]
- pan locus tag?: PNEUPAN003388000
- symbol: SPN23F_RS09625
- pan gene symbol?: amiC
- synonym:
- product: ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS09625 [old locus tags: SPN23F19080 SPN23F_19080 ]
- symbol: SPN23F_RS09625
- product: ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 1850248..1851501
- length: 1254
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (1850248..1851501) NCBI
- BioCyc: SPN23F_RS09625 BioCyc
- MicrobesOnline: see SPN23F19080
- PneumoBrowse for strain D39V: SPV_1670 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTAC
ATCAATCAATTAGGTCATGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTAT
GCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTCACTTCTATGCTAACTTGATTGAC
ATTGATCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTTCGT
TTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATAT
CTCTTGTACTTTAACAGTCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTA
GGTGACTCTTACCCAACCTATGCTAATACACCAGTTCTTCAGGTTATTACTCAAGGTCAA
GGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTAAAT
ATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTAT
GGGAAAGATGATCCTTATACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTC
AGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTGCCTATGCTCTTGCCGTGCCACTT
GGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGACTTTG
ACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCA
TCTATTGCCCTTCCAGATTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTT
TTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTGTTACAGCCATTTGGATTCGTCGT
TACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTGTCT
GAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGA
ATTCCTGGTGCCATTATTGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCC
TTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAAAAGCATCTAATAACTCTATGGTC
GTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGATATT
TGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS09625 [old locus tags: SPN23F19080 SPN23F_19080 ]
- symbol: SPN23F_RS09625
- description: ABC transporter permease
- length: 417
- theoretical pI: 9.15565
- theoretical MW: 45965.6
- GRAVY: 0.0978417
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 125.8)and 1 moreTransport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 22.7)
- TheSEED: see SPN23F19080
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 123.6)and 3 moreno clan defined DUF4941; Domain of unknown function (DUF4941) (PF16299; HMM-score: 11)DUF996; Protein of unknown function (DUF996) (PF06195; HMM-score: 8.9)DUF373; Domain of unknown function (DUF373) (PF04123; HMM-score: 8.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005143
- TAT(Tat/SPI): 0.000265
- LIPO(Sec/SPII): 0.000745
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000378492 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYLRFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSVNIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGTLTFLLALPTIALVYIVRLIGSSIALPDSFPILGAGDWRSYVLPAVILGLLGAPVTAIWIRRYMIDLQSQDFVRFARAKGLSEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGDIWMTIIDPRIKLTEKGGK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CodY see SPN23F19080
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1670 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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