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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN994038
- locus tag: SPN994038_15280 [new locus tag: SPN994038_RS08265 ]
- pan locus tag?: PNEUPAN003181000
- symbol: SPN994038_15280
- pan gene symbol?: corA2
- synonym:
- product: CorA-like Mg2+ transporter protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN994038_15280 [new locus tag: SPN994038_RS08265 ]
- symbol: SPN994038_15280
- product: CorA-like Mg2+ transporter protein
- replicon: chromosome
- strand: -
- coordinates: 1558396..1559304
- length: 909
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312041 (1558396..1559304) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1561 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGGTTTTAGAAAAGCAGTTGGGCAATGGTTGTACCTGGATAGACCTAGACCTAGGAAAG
TTGAATAAACTAGAAGACCTTTCTGAAATTTACGGTTTGGACAAGGAAACCATTGAATAC
GCACTGGATAGAAACGAGCGCGCCCACATGGACTACCACCGTGAAAGTGGGACGGTTACC
TTTATCTATAATGTCCTAGACGTAAAAAAGGACAAGGCCTACTATGAGACTTTTCCCATG
ACCTTTATTGTCGAGCATCGTCGCCTGATTACCATTAGTAATACCAAGAACGCCTATGTC
ATTGAACAGATGACTCGTTATCTGGAGAGCCATGACACGCTTTCGATTTATAAGTTTCTC
TTTGCCAGTCTGGAAATCATCAGCAATGCCTACTATCCTGTCATTGAGCAGATGGACAAG
AGTAGGGATGAGGTCAATGACCTCTTGCGCCAGCGAACTACCAAGAAAAACCTCTTTGCC
CTGTCTGATTTGGAGACTGGTATGGTTTATCTGACGGCAGCTGCCAAACAAAATCGGATT
TTGTTAGAGCATATTCAAGGTCATGCCTTGTATCGTAGTTTTGATGAGATTGAGAGAGAA
CAGTTTGATGATGCCATGATTGAGGCTCATCAGCTGGTATCCATGACAGACCTAATCTCT
CAGATTTTACAGCAGCTTTCAGCCTCTTACAACAATATTCTAAACAATAATCTGAATGAC
AATTTGACAACCTTGACTATCATTTCAGTCTTGCTAGCTGTTTTGGCAGTCGTGACAGGC
TTTTTCGGAATGAATGTTCCCTTACCTTTAACAGATGAGCCCCATGCTTGGCTCTATATC
AGTTTGGCTAGTGCAGGTTTGTGGATTGTTTTATCCTTGTTACTAAGGAAAATTGCGAAA
AAAAGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN994038_15280 [new locus tag: SPN994038_RS08265 ]
- symbol: SPN994038_15280
- description: CorA-like Mg2+ transporter protein
- length: 302
- theoretical pI: 5.06746
- theoretical MW: 34754.7
- GRAVY: -0.084106
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds magnesium and cobalt transport protein CorA (TIGR00383; HMM-score: 75.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined CorA; CorA-like Mg2+ transporter protein (PF01544; HMM-score: 180.4)and 4 moreT2SSF; Type II secretion system (T2SS), protein F (PF00482; HMM-score: 20.5)Catalase-rel; Catalase-related immune-responsive (PF06628; HMM-score: 13)DUF5663; Protein of unknown function (DUF5663) (PF18908; HMM-score: 12.8)ETRAMP; Malarial early transcribed membrane protein (ETRAMP) (PF09716; HMM-score: 7.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 2
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9997
- Cell wall & surface Score: 0
- Extracellular Score: 0.0003
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001444
- TAT(Tat/SPI): 0.000114
- LIPO(Sec/SPII): 0.000429
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP31264 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MVLEKQLGNGCTWIDLDLGKLNKLEDLSEIYGLDKETIEYALDRNERAHMDYHRESGTVTFIYNVLDVKKDKAYYETFPMTFIVEHRRLITISNTKNAYVIEQMTRYLESHDTLSIYKFLFASLEIISNAYYPVIEQMDKSRDEVNDLLRQRTTKKNLFALSDLETGMVYLTAAAKQNRILLEHIQGHALYRSFDEIEREQFDDAMIEAHQLVSMTDLISQILQQLSASYNNILNNNLNDNLTTLTIISVLLAVLAVVTGFFGMNVPLPLTDEPHAWLYISLASAGLWIVLSLLLRKIAKKS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1561 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]