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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN994038
- locus tag: SPN994038_RS07355 [old locus tag: SPN994038_13640 ]
- pan locus tag?: PNEUPAN002951000
- symbol: SPN994038_RS07355
- pan gene symbol?: aldR
- synonym:
- product: RidA family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN994038_RS07355 [old locus tag: SPN994038_13640 ]
- symbol: SPN994038_RS07355
- product: RidA family protein
- replicon: chromosome
- strand: -
- coordinates: 1388208..1388588
- length: 381
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_021026 (1388208..1388588) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1397 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
301
361ATGGCAAAAACAATTCATACAGATAAGGCCCCAAAGGCTATCGGACCCTATGTTCAAGGA
AAAATCGTTGGCAACCTTTTGTTTGCTAGCGGTCAAGTTCCCCTATCCCCTGAAACTGGA
GAAATTGTAGGAGAGAATATCCAAGAACAGACAGAGCAAGTCTTGAAAAACATCGGTGCT
ATTTTGGCAGAAGCAGGAACAGACTTTGACCATGTTGTCAAAACAACTTGCTTCTTGAGC
GATATGAACGACTTTGTTCCTTTTAATGAGGTTTACCAAACGGCCTTCAAAGAGGAATTC
CCAGCTCGTTCAGCTGTGGAGGTAGCTCGTCTTCCTCGTGATGTAAAAGTCGAAATTGAA
GTCATCGCAGAGATTGGATAA60
120
180
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360
381
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN994038_RS07355 [old locus tag: SPN994038_13640 ]
- symbol: SPN994038_RS07355
- description: RidA family protein
- length: 126
- theoretical pI: 4.38975
- theoretical MW: 13731.5
- GRAVY: -0.0349206
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Other reactive intermediate/imine deaminase (TIGR00004; HMM-score: 179.9)and 1 morepyrimidine utilization protein C (TIGR03610; HMM-score: 63.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: YjgF-like (CL0534) Ribonuc_L-PSP; Endoribonuclease L-PSP (PF01042; HMM-score: 147.8)and 3 moreno clan defined MINDY-3_4_CD; Deubiquitinating enzyme MINDY-3/4, conserved domain (PF13898; HMM-score: 17.1)AbrB_C; AbrB C-terminal domain (PF18277; HMM-score: 12.9)YjgF-like (CL0534) YjgF_endoribonc; YjgF/chorismate_mutase-like, putative endoribonuclease (PF14588; HMM-score: 12.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015676
- TAT(Tat/SPI): 0.001705
- LIPO(Sec/SPII): 0.005769
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001140412 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAKTIHTDKAPKAIGPYVQGKIVGNLLFASGQVPLSPETGEIVGENIQEQTEQVLKNIGAILAEAGTDFDHVVKTTCFLSDMNDFVPFNEVYQTAFKEEFPARSAVEVARLPRDVKVEIEVIAEIG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1397 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.