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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN994039
  • locus tag: SPN994039_02330 [new locus tag: SPN994039_RS01250 ]
  • pan locus tag?: PNEUPAN000966000
  • symbol: rpsC
  • pan gene symbol?: rpsC
  • synonym:
  • product: 30S ribosomal protein S3

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN994039_02330 [new locus tag: SPN994039_RS01250 ]
  • symbol: rpsC
  • product: 30S ribosomal protein S3
  • replicon: chromosome
  • strand: +
  • coordinates: 220711..221364
  • length: 654
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: FQ312044 (220711..221364) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0199 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    GTGGGTCAAAAAGTACATCCAATTGGTATGCGTGTCGGCATCATCCGTGATTGGGATGCC
    AAATGGTATGCTGAAAAAGAATACGCGGATTACCTTCATGAAGATCTTGCAATCCGTAAA
    TTCGTTCAAAAAGAACTTGCTGACGCAGCAGTTTCAACTATTGAAATCGAACGCGCAGTA
    AACAAAGTTAACGTTTCACTTCACACTGCTAAACCAGGTATGGTTATCGGTAAAGGTGGT
    GCTAACGTTGATGCACTCCGTGCAAAACTTAACAAATTGACTGGAAAACAAGTACACATC
    AACATCATCGAAATCAAACAACCTGATTTGGATGCTCACCTTGTAGGTGAAGGAATTGCT
    CGTCAATTGGAGCAACGTGTTGCTTTCCGTCGTGCACAAAAACAAGCAATCCAACGTGCA
    ATGCGTGCTGGAGCTAAAGGAATCAAAACTCAAGTATCAGGTCGTTTGAACGGTGCAGAT
    ATCGCCCGTGCTGAAGGCTACTCTGAAGGAACTGTTCCGCTTCACACACTTCGTGCAGAT
    ATCGATTACGCTTGGGAAGAAGCAGATACTACATACGGTAAACTTGGTGTTAAAGTATGG
    ATCTACCGTGGTGAAGTTCTTCCAGCTCGTAAAAACACTAAAGGAGGTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    654

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN994039_02330 [new locus tag: SPN994039_RS01250 ]
  • symbol: RpsC
  • description: 30S ribosomal protein S3
  • length: 217
  • theoretical pI: 10.2858
  • theoretical MW: 24045.5
  • GRAVY: -0.42212

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS3 (TIGR01009; HMM-score: 308)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS3 (TIGR01008; HMM-score: 107)
    NusA family KH domain protein, archaeal (TIGR01952; HMM-score: 19.2)
    Genetic information processing Transcription Transcription factors transcription termination factor NusA (TIGR01953; HMM-score: 19.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain (PF00189; HMM-score: 131.1)
    and 6 more
    KH (CL0007) KH_2; KH domain (PF07650; HMM-score: 72.6)
    KH_4; KH domain (PF13083; HMM-score: 29.5)
    no clan defined VAR1; Mitochondrial ribosomal protein (VAR1) (PF05316; HMM-score: 22.6)
    KH (CL0007) MRP-S24; Mitochondrial ribosome subunit S24 (PF14955; HMM-score: 15.9)
    no clan defined LeuA_dimer; LeuA allosteric (dimerisation) domain (PF08502; HMM-score: 14.4)
    KH (CL0007) KH_5; NusA-like KH domain (PF13184; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002329
    • TAT(Tat/SPI): 0.000124
    • LIPO(Sec/SPII): 0.000381
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCP33927 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNKLTGKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARAEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPARKNTKGGK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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