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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 27-FEB-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_01637 [new locus tag: SPNA45_RS09150 ]
- pan locus tag?: PNEUPAN001286000
- symbol: fabH
- pan gene symbol?: fabH
- synonym:
- product: 3-oxoacyl-[acyl-carrier-protein] synthase III
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_01637 [new locus tag: SPNA45_RS09150 ]
- symbol: fabH
- product: 3-oxoacyl-[acyl-carrier-protein] synthase III
- replicon: chromosome
- strand: -
- coordinates: 1661291..1662265
- length: 975
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: HE983624 (1661291..1662265) NCBI
- BioCyc: see SPNA45_RS09150
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0380 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGGCTTTTGCAAAAATAAGTCAGGTTGCTCATTATGTGCCAGAGCAAGTGGTTACAAAT
CACGACTTGGCTCAGATTATGGATACCAATGATGAGTGGATTTCAAGTCGAACGGGAATA
CGACAAAGGCATATTTCAAGAACAGAATCTACCAGTGATTTGGCTACAGAGGTTGCTAAG
AAACTGATGGCAAAAGCTGGAATAACAGGAAAAGAACTGGATTTTATCATCCTAGCTACC
ATTACTCCAGATTCGATGATGCCCTCTACAGCTGCTCGTGTTCAAGCTAATATTGGCGCT
AATAAAGCCTTTGCTTTTGACTTAACCGCGGCTTGCAGTGGATTTGTATTTGCTCTTTCA
ACTGCTGAAAAGTTTATCGCTTCTGGTCGCTTTCAAAAAGGCTTGGTGATTGGTAGTGAA
ACCCTCTCTAAGGCAGTCGATTGGTCGGATCGATCAACAGCTGTGTTGTTTGGAGATGGT
GCTGGTGGTGTCTTGTTAGAAGCTAGCGAGCAAGAGCATTTCTTAGCTGAGAGTCTCAAT
AGCGATGGAAGTCGCAGCGAGTGTTTAACTTATGGGCATTCAGGTTTGCATTCTCCATTT
TCAGATCAAGAAAGTGCAGATTCGTTTTTGAAGATGGATGGACGCACAGTCTTTGATTTT
GCCATTCGAGATGTAGCCAAGTCTATCAAGCAGACTATTGATGAATCTCCTATAGAGGTG
ACAGACTTGGATTATCTGCTACTTCATCAAGCCAATGACCGTATTTTGGATAAGATGGCT
AGAAAAATTGGTGTTGACCGAGCCAAACTTCCAGCCAATATGATGGAATATGGCAATACC
AGTGCAGCCAGTATCCCGATTTTACTTTCAGAGTGTGTAGAACAAGGTCTCATCCCTTTA
GATGGTAGCCAGACTGTTCTTCTATCAGGCTTCGGTGGAGGCTTGACCTGGGGCACGCTC
ATTCTTACAATTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_01637 [new locus tag: SPNA45_RS09150 ]
- symbol: FabH
- description: 3-oxoacyl-[acyl-carrier-protein] synthase III
- length: 324
- theoretical pI: 4.75667
- theoretical MW: 34902.3
- GRAVY: -0.00308642
⊟Function[edit | edit source]
- TIGRFAM: Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] synthase III (TIGR00747; EC 2.3.1.180; HMM-score: 348.7)and 3 moreFatty acid and phospholipid metabolism Biosynthesis putative hydroxymethylglutaryl-CoA synthase (TIGR00748; EC 2.3.3.10; HMM-score: 47.4)hydroxymethylglutaryl-CoA synthase (TIGR01835; EC 2.3.3.10; HMM-score: 29.7)Fatty acid and phospholipid metabolism Other acetyl-CoA C-acyltransferase (TIGR01930; EC 2.3.1.16; HMM-score: 26.9)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Thiolase (CL0046) ACP_syn_III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (PF08545; HMM-score: 106.7)ACP_syn_III_C; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal (PF08541; HMM-score: 105.4)and 3 moreThiolase_N; Thiolase, N-terminal domain (PF00108; HMM-score: 36.2)Chal_sti_synt_C; Chalcone and stilbene synthases, C-terminal domain (PF02797; HMM-score: 24.4)ketoacyl-synt; Beta-ketoacyl synthase, N-terminal domain (PF00109; HMM-score: 14.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004482
- TAT(Tat/SPI): 0.000222
- LIPO(Sec/SPII): 0.000296
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCM08922 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAFAKISQVAHYVPEQVVTNHDLAQIMDTNDEWISSRTGIRQRHISRTESTSDLATEVAKKLMAKAGITGKELDFIILATITPDSMMPSTAARVQANIGANKAFAFDLTAACSGFVFALSTAEKFIASGRFQKGLVIGSETLSKAVDWSDRSTAVLFGDGAGGVLLEASEQEHFLAESLNSDGSRSECLTYGHSGLHSPFSDQESADSFLKMDGRTVFDFAIRDVAKSIKQTIDESPIEVTDLDYLLLHQANDRILDKMARKIGVDRAKLPANMMEYGNTSAASIPILLSECVEQGLIPLDGSQTVLLSGFGGGLTWGTLILTI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0380 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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