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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 27-FEB-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_01756 [new locus tag: SPNA45_RS09800 ]
- pan locus tag?: PNEUPAN001030000
- symbol: manN
- pan gene symbol?: manN
- synonym:
- product: putative mannose-specific phosphotransferase system (PTS), IID component
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_01756 [new locus tag: SPNA45_RS09800 ]
- symbol: manN
- product: putative mannose-specific phosphotransferase system (PTS), IID component
- replicon: chromosome
- strand: +
- coordinates: 1788679..1789590
- length: 912
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: HE983624 (1788679..1789590) NCBI
- BioCyc: see SPNA45_RS09800
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0262 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGACTGAAAAACTTCAATTAACTAAATCAGATCGTAAAAAAGTTTGGTGGCGTTCAACC
TTCTTACAAGGGTCTTGGAACTTTGAACGGATGCAAAACTTGGGCTGGGCTTATACACTC
ATTCCAGCTATCAAAAAACTCTATACTAAAAAAGAAGATCAAATCGCTGCTCTTGAGCGT
CACCTTGAGTTCTTCAACACTCATCCATACGTAGCTGCTCCAGTCATGGGGGTTACTCTT
GCGCTTGAAGAAGAACGTGCTAACGGTGTGGAAATCGATGACGCTGCTATCCAAGGGGTT
AAAATCGGTATGATGGGACCTCTTGCTGGTATCGGTGACCCAGTATTCTGGTTTACAGTA
CGCCCAATCCTTGGATCTCTCGGTGCTTCACTTGCCCTTACTGGCAATATCTTGGGGCCA
CTCCTCTTCTTTGTTGCATGGAACTTGATTCGTATGTCATTCTTGTGGTATGTTCAAGAG
ATTGGATACAAGGCTGGATCAGAAATCACTAAAGATATGTCTGGTGGTATCCTTCAAGAT
ATCACTAAAGGAGCTTCTATCCTTGGGATGTTCATTCTTGCTGTCCTTGTTCAACGCTGG
GTAAATATTAAATTTGCTTTCGATGTTTCTAAAGTTCAACTAGATGAAAAGGCTTATATC
CATTGGGATAAATTGCCAGAAGGGTCTAAAGGTATCCAAGAAGCATTCGCACAAGTAGGA
CAAGGATTGTCTCAAACTCCTGAAAAAGTTACTACTTTCCAACAAAACTTGGATATGTTG
ATTCCTGGATTATCAGGACTACTCCTTACTTTACTTTGCATGTACTTACTTAAGAAAAAA
GTATCTCCAATCACTATTATCCTTGCCCTCTTCGCAGTGGGTATTGTGGCACATGTTCTT
CACATCATGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_01756 [new locus tag: SPNA45_RS09800 ]
- symbol: ManN
- description: putative mannose-specific phosphotransferase system (PTS), IID component
- length: 303
- theoretical pI: 9.2215
- theoretical MW: 33785.6
- GRAVY: 0.291419
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, mannose/fructose/sorbose family, IID component (TIGR00828; HMM-score: 340.4)Signal transduction PTS PTS system, mannose/fructose/sorbose family, IID component (TIGR00828; HMM-score: 340.4)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined EIID-AGA; PTS system mannose/fructose/sorbose family IID component (PF03613; HMM-score: 375.5)and 1 moreGx_transp (CL0315) ThiW; Thiamine-precursor transporter protein (ThiW) (PF09512; HMM-score: 9.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003782
- TAT(Tat/SPI): 0.000638
- LIPO(Sec/SPII): 0.001333
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCM09041 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTEKLQLTKSDRKKVWWRSTFLQGSWNFERMQNLGWAYTLIPAIKKLYTKKEDQIAALERHLEFFNTHPYVAAPVMGVTLALEEERANGVEIDDAAIQGVKIGMMGPLAGIGDPVFWFTVRPILGSLGASLALTGNILGPLLFFVAWNLIRMSFLWYVQEIGYKAGSEITKDMSGGILQDITKGASILGMFILAVLVQRWVNIKFAFDVSKVQLDEKAYIHWDKLPEGSKGIQEAFAQVGQGLSQTPEKVTTFQQNLDMLIPGLSGLLLTLLCMYLLKKKVSPITIILALFAVGIVAHVLHIM
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0262 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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