Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2023
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_RS00050 [old locus tag: SPNA45_00010 ]
- pan locus tag?: PNEUPAN000365000
- symbol: SPNA45_RS00050
- pan gene symbol?: —
- synonym:
- product: serine hydrolase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_RS00050 [old locus tag: SPNA45_00010 ]
- symbol: SPNA45_RS00050
- product: serine hydrolase
- replicon: chromosome
- strand: +
- coordinates: 9280..10548
- length: 1269
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_018594 (9280..10548) NCBI
- BioCyc: SPNA45_RS00050 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0010 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261ATGCGTAAATTCTTAATTATTTTGTTGCTACCAAGTTTTTTGACCATTTCAAAAGTCGTT
AGCACAGAAAAAGAAGTCGTCTATACTTCGAAAGAAATTTATTACCTTTCACAATCTGAC
TTTGGTATTTATTTTAGAGAAAAATTAAGTTCTCCCATGGTTTATGGAGAGGTTCCTGTT
TATGCGAATGAAGATTTAGTAGTGGAATCTGGGAAATTGACTCCCAAAATAAGTTTTCAA
ATAACCGAGTGGCGCTTAAATAAACAAGGAATTCCAGTATTTAAGCTATCAAATCATCAA
TTTATAGCTGCGGACAAACGATTTTTATATGATCAATCAGAGGTAACTCCAACAATAAAA
AAAGTATGGTTAGAATCTGACTTTAAACTGTACAATAGTCCTTATGATTTAAAAGAAGTG
AAATCATCCTTATCAGCTTATTCGCAAGTATCAATCGACAAGACCATGTTTGTAGAAGGA
AGAGAATTTCTACATATTGATCAGGCTGGATGGGTAGCTAAAGAATCAACTTCTGAAGAA
GATAATCGGATGAGTAAAGTTCAAGAAATGTTATCTGAAAAATATCAGAAAGATTCTTTC
TCTATTTATGTTAAGCAACTGACTACTGGAAAAGAAGCTGGTATCAATCAAGATGAAAAG
ATGTATGCAGCCAGCGTTTTGAAACTCTCCTATCTCTATTATACGCAAGAAAAAATAAAT
GAGGGTCTTTATCAGTTAGATACGACTGTAAAATACGTATCTGCAGTCAATGATTTTCCA
GGTTCTTATAAACCAGAGGGAAGTGGTAGTCTTCCTAAAAAAGAAGATAATAAAGAATAT
TCTTTAAAGGATTTAATTACGAAAGTATCAAAAGAATCTGATAATGTAGCTCATAATCTA
TTGGGATATTACATTTCAAACCAATCTGATGCCACATTCAAATCCAAAATGTCTGCCATT
ATGGGAGATGATTGGGATCCAAAAGAAAAATTGATTTCTTCTAAGATGGCCGGGAAGTTT
ATGGAAGCTATTTATAATCAAAATGGATTTGTGCTAGAGTCTTTGACTAAAACAGATTTT
GATAGTCAGCGAATTGCCAAAGGTGTTTCTGTTAAAGTAGCTCATAAAATTGGAGATGCG
GATGAATTTAAGCATGATACGGGTGTTGTCTATGCAGATTCTCCATTTATTCTTTCTATT
TTTACTAAGAATTCTGATTATGATACGATTTCTAAGATAGCCAAGGATGTTTATGAGGTT
CTAAAATGA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1269
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_RS00050 [old locus tag: SPNA45_00010 ]
- symbol: SPNA45_RS00050
- description: serine hydrolase
- length: 422
- theoretical pI: 5.83667
- theoretical MW: 48142.4
- GRAVY: -0.422038
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Beta-lactamase (CL0013) Beta-lactamase2; Beta-lactamase enzyme family (PF13354; HMM-score: 147.4)and 1 moreSH3 (CL0010) DUF5776; Domain of unknown function (DUF5776) (PF19087; HMM-score: 16.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.1093
- Cell wall & surface Score: 0.0168
- Extracellular Score: 0.8738
- SignalP: Signal peptide SP(Sec/SPI) length 22 aa
- SP(Sec/SPI): 0.822794
- TAT(Tat/SPI): 0.001018
- LIPO(Sec/SPII): 0.082186
- Cleavage Site: CS pos: 22-23. VST-EK. Pr: 0.3033
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001224753 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MRKFLIILLLPSFLTISKVVSTEKEVVYTSKEIYYLSQSDFGIYFREKLSSPMVYGEVPVYANEDLVVESGKLTPKISFQITEWRLNKQGIPVFKLSNHQFIAADKRFLYDQSEVTPTIKKVWLESDFKLYNSPYDLKEVKSSLSAYSQVSIDKTMFVEGREFLHIDQAGWVAKESTSEEDNRMSKVQEMLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKLSYLYYTQEKINEGLYQLDTTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISNQSDATFKSKMSAIMGDDWDPKEKLISSKMAGKFMEAIYNQNGFVLESLTKTDFDSQRIAKGVSVKVAHKIGDADEFKHDTGVVYADSPFILSIFTKNSDYDTISKIAKDVYEVLK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0010 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.