From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_RS00610 [old locus tag: SPNA45_00109 ]
  • pan locus tag?: PNEUPAN003768000
  • symbol: SPNA45_RS00610
  • pan gene symbol?: ctpC
  • synonym:
  • product: heavy metal translocating P-type ATPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_RS00610 [old locus tag: SPNA45_00109 ]
  • symbol: SPNA45_RS00610
  • product: heavy metal translocating P-type ATPase
  • replicon: chromosome
  • strand: +
  • coordinates: 109436..111499
  • length: 2064
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018594 (109436..111499) NCBI
  • BioCyc: SPNA45_RS00610 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1927 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    ATGTCTTTTAAAGTGCTACATAGAGGATACCAACATATCCGACTATCATCTTCTTTTTCA
    CTTACCTTGGATATTCAAGACTATCTTCGTTCCTTGGCGAGAGATGAAAAGGGGATTGAG
    TCTATCCAGTTTTACATGGATCAACAGCACTTTACTCTACGCATAAAAGAAGGCTTTTCT
    GTATTAGATAATGCAGAAGCCTTTTTAAAAAGAATTGATAAAGGGAAAGTTTCTGAGTTG
    ATGACTCTTCCCATTCGTAGAGAAGAGAGTGCTTATTCTATTGTTTCAGGTGCAGCGGTT
    AAGCGTGTACTTTTTCGTAGTTTTGTGCCGTATCCTATTCGCTATATATGGACTTGTTAT
    CAGGCTTTGGGTTATATTAGAGAAGCCTATCAAACACTAGCGCGTAAGGAACTAACGATG
    GAAGTCTTGGACTGTTCGGCTATTTTATTGTCCTTGTTTATGAACCAATCCAAGACAGCT
    AGCAATATCATGTTTATGCTTGATTTGGGGAATCATTTAGATCAGTGGTCCTTGAAAAAA
    ACTGCAACAGATTTAGAACAGAGTCTTCTTGCAAAAGAGAGCGATGTATTCCTAGTACAG
    GGCGATACGGTTGTTAGTATCAAGAGTTCCGATGTTCAAATAGGAGATGTCTTGATCTTA
    TCTCAAGGAAATGAAATTCTGTTTGATGGACAAGTAGTTTCAGGTTTAGGTATGGTCAAC
    GAAAGTTCCTTGACAGGAGAGAGTTTTCCAGTTGAAAAAAGAGAGTCTGATTTGGTTTGT
    GCAAATACAGTATTAGAAACTGGAGAGTTACGCATTCGTGTAACAGATAATCAGATGAAC
    AGCCGTATTTTACAGCTGATTGAGTTGATGAAGAAATCTGAAGAAAACAAGAAAACGAAA
    CAACGCTATTTCATCAAGATGGCGGATAAAGTCGTCAAATATAATTTCTTGGGGGCTGGG
    CTGACTTACCTATTGACAGGTTCTTTTTCTAAGGCTATTTCTTTCCTATTGGTCGATTTC
    TCCTGCGCTTTGAAAATCTCTACTCCTGTAGCTTATTTGACAGTTATCAAGGAAGGGTTG
    AACCGTGAAATGGTGATTAAGGATGGAGATGTTCTGGAGAAATATCTGGAAGTTGATACT
    TTCTTGTTTGATAAGACAGGAACAATCACAACTAGTTATCCTATAGTTGAAAAGGTGTTA
    CCTTTTGGAGACTATAGTGAGGAAGATATTCTCAGAATCAGTGCCTGTCTTGAGGAACAC
    ATTTATCATCCTATTGCTAATGCCATCGTCAAGCAAGCTGAGATAGAGGGAATTGAACAT
    GAGGAAATGCATGGGAAACTCCAATATATCGCAAGCAAGGGGATCAAATCTCATATAGAT
    GGCCAACCAGTTCTTATTGGGAATTATGTCTTGATGCAGGATGAGCAGATTCATATCAGT
    TCAGAACAAAATGCTTTAATTGAAGAGTACAAGAGTCACTACAATCTCTTATTCTTGGCT
    TATCAAAATGAATTGATTGGAATGTTCTGCATTCATACTCCTTTGAGAAAAGAAGCAAAA
    ACAGCCTTGGATAAACTTAAGACACAGGGGAAAAAATTGATTCTGGCAACAGGAGACACC
    TTGATTAGGACAGAGGAATTAGTCAAAGATTTGCCCTTTGATCAGGTCTATACAGACTTG
    AAACCTGATGGGAAATTTGAGTTAGTAGAGAAACTGCAGAAAGCAGGTCACACTATTTTG
    ATGGTTGGAGATGGATTGAATGACTCAGCGGCTTTAACTCTATCAGATATCGGTATGGTG
    ATGAATGAGAGTGCAGATATTTCTAAGCAGATGAGTGATATCTTATTGTTAGATAATCGT
    TTGGATTTCTTCCAAGAGTTGGATTCGTTATCATCATCTTTGCAAACACTCATCAAGAAA
    AATATTCAAGATACCGTTGTCGTAAATAGTAGTTTGATTGGCTTCGGCTTATTTAATTGG
    CTCAGTCCTTCAAATCTCTCTATCTTACATAATCTAACAACCTTGCGCATTGTCCTGCGT
    AGCCTGTCTATTAAAAATAGATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2064

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_RS00610 [old locus tag: SPNA45_00109 ]
  • symbol: SPNA45_RS00610
  • description: heavy metal translocating P-type ATPase
  • length: 687
  • theoretical pI: 5.56788
  • theoretical MW: 77635.1
  • GRAVY: -0.0528384

⊟Function[edit | edit source]

  • TIGRFAM:
    heavy metal translocating P-type ATPase (TIGR01525; EC 3.6.3.-; HMM-score: 523.4)
    and 18 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds cadmium-translocating P-type ATPase (TIGR01512; EC 3.6.3.3; HMM-score: 283.7)
    Cellular processes Cellular processes Detoxification copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 267.6)
    Metabolism Transport and binding proteins Cations and iron carrying compounds copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 267.6)
    HAD ATPase, P-type, family IC (TIGR01494; EC 3.6.3.-; HMM-score: 259.6)
    plasma-membrane proton-efflux P-type ATPase (TIGR01647; EC 3.6.3.6; HMM-score: 111.7)
    Metabolism Transport and binding proteins Cations and iron carrying compounds K+-transporting ATPase, B subunit (TIGR01497; EC 3.6.3.12; HMM-score: 106.6)
    calcium-translocating P-type ATPase, PMCA-type (TIGR01517; EC 3.6.3.8; HMM-score: 87)
    P-type ATPase of unknown pump specificity (type V) (TIGR01657; HMM-score: 77.6)
    Metabolism Transport and binding proteins Cations and iron carrying compounds magnesium-translocating P-type ATPase (TIGR01524; EC 3.6.3.2; HMM-score: 70.6)
    calcium-transporting P-type ATPase, PMR1-type (TIGR01522; EC 3.6.3.8; HMM-score: 59.7)
    Metabolism Energy metabolism ATP-proton motive force interconversion Na,H/K antiporter P-type ATPase, alpha subunit (TIGR01106; EC 3.6.3.-; HMM-score: 54.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds calcium-translocating P-type ATPase, SERCA-type (TIGR01116; EC 3.6.3.8; HMM-score: 53)
    potassium/sodium efflux P-type ATPase, fungal-type (TIGR01523; EC 3.6.3.-; HMM-score: 46.8)
    Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 28.6)
    sucrose-phosphate phosphatase subfamily (TIGR01482; EC 3.1.3.-; HMM-score: 20.8)
    Metabolism Central intermediary metabolism Other 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (TIGR01489; HMM-score: 17.2)
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIB (TIGR01484; HMM-score: 13.9)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 10.6)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 105.5)
    HAD (CL0137) Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 105.5)
    and 3 more
    Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 30.3)
    NADP_Rossmann (CL0063) CoA_binding_3; CoA-binding domain (PF13727; HMM-score: 13.3)
    HAD (CL0137) HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 9.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9987
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0011
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005593
    • TAT(Tat/SPI): 0.000405
    • LIPO(Sec/SPII): 0.000388
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000008796 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSFKVLHRGYQHIRLSSSFSLTLDIQDYLRSLARDEKGIESIQFYMDQQHFTLRIKEGFSVLDNAEAFLKRIDKGKVSELMTLPIRREESAYSIVSGAAVKRVLFRSFVPYPIRYIWTCYQALGYIREAYQTLARKELTMEVLDCSAILLSLFMNQSKTASNIMFMLDLGNHLDQWSLKKTATDLEQSLLAKESDVFLVQGDTVVSIKSSDVQIGDVLILSQGNEILFDGQVVSGLGMVNESSLTGESFPVEKRESDLVCANTVLETGELRIRVTDNQMNSRILQLIELMKKSEENKKTKQRYFIKMADKVVKYNFLGAGLTYLLTGSFSKAISFLLVDFSCALKISTPVAYLTVIKEGLNREMVIKDGDVLEKYLEVDTFLFDKTGTITTSYPIVEKVLPFGDYSEEDILRISACLEEHIYHPIANAIVKQAEIEGIEHEEMHGKLQYIASKGIKSHIDGQPVLIGNYVLMQDEQIHISSEQNALIEEYKSHYNLLFLAYQNELIGMFCIHTPLRKEAKTALDKLKTQGKKLILATGDTLIRTEELVKDLPFDQVYTDLKPDGKFELVEKLQKAGHTILMVGDGLNDSAALTLSDIGMVMNESADISKQMSDILLLDNRLDFFQELDSLSSSLQTLIKKNIQDTVVVNSSLIGFGLFNWLSPSNLSILHNLTTLRIVLRSLSIKNR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNA45_RS00610&oldid=153972"