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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2023
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_RS06840 [old locus tag: SPNA45_01211 ]
- pan locus tag?: PNEUPAN001887000
- symbol: SPNA45_RS06840
- pan gene symbol?: —
- synonym:
- product: PspC domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_RS06840 [old locus tag: SPNA45_01211 ]
- symbol: SPNA45_RS06840
- product: PspC domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 1222105..1222377
- length: 273
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_018594 (1222105..1222377) NCBI
- BioCyc: SPNA45_RS06840 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0803 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAACAGTAAGTTTTATAAAATGAGACGAAATCGCATGATTTCAGGAGTTTTAGCAGGT
CTGTCAGACAAGTGGAACTTTGATGTTACCCTTGTTCGTTTCTTGTTTGCTATTTTTACA
GTCGTAAACTTTGGCCTTGGCGTGATTATCTATATCATCCTAGCTTCAATCATGCCGACC
AAGGAAGAAATCGAAGCAGAAATGTACGGAACAGGCCCACGCAAACGAAAAGAAGCCCAA
GCCATTGACGATAATGAAGGCTGGTTTTGGTGA60
120
180
240
273
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_RS06840 [old locus tag: SPNA45_01211 ]
- symbol: SPNA45_RS06840
- description: PspC domain-containing protein
- length: 90
- theoretical pI: 9.60291
- theoretical MW: 10457.2
- GRAVY: 0.0377778
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Adaptations to atypical conditions phage shock protein C (TIGR02978; HMM-score: 40.7)and 1 moreHypothetical proteins Conserved TIGR00366 family protein (TIGR00366; HMM-score: 15)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined PspC; PspC domain (PF04024; HMM-score: 60)and 3 moreIT (CL0182) SCFA_trans; Short chain fatty acid transporter (PF02667; HMM-score: 14.9)no clan defined Inovirus_G7P_2; Tail virion protein G7P (PF19978; HMM-score: 14.2)CDI; Cyclin-dependent kinase inhibitor (PF02234; HMM-score: 13.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9852
- Cell wall & surface Score: 0
- Extracellular Score: 0.0148
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001396
- TAT(Tat/SPI): 0.000177
- LIPO(Sec/SPII): 0.002119
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001085050 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNSKFYKMRRNRMISGVLAGLSDKWNFDVTLVRFLFAIFTVVNFGLGVIIYIILASIMPTKEEIEAEMYGTGPRKRKEAQAIDDNEGWFW
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0803 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]