From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_RS06965 [old locus tag: SPNA45_01231 ]
  • pan locus tag?: PNEUPAN001936000
  • symbol: cbpE
  • pan gene symbol?: cbpE
  • synonym:
  • product: phosphorylcholine esterase CbpE

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_RS06965 [old locus tag: SPNA45_01231 ]
  • symbol: cbpE
  • product: phosphorylcholine esterase CbpE
  • replicon: chromosome
  • strand: +
  • coordinates: 1242876..1244759
  • length: 1884
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018594 (1242876..1244759) NCBI
  • BioCyc: SPNA45_RS06965 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0821 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAAAAAGAAATTAACTAGTTTAGCACTTGTAGGCGCTTTTTTAGGTTTGTCATGGTAT
    GGGAATGTTCAGGCTCAAGAAAGTTCAGGAAATAAAATCCACTTTATCAATGTTCAAGAA
    GGTGGCAGTGATGCGATTATTCTTGAAAGCAATGGACATTTTGCCATGGTGGATACAGGA
    GAAGATTATGATTTCCCAGATGGAAGTGATTCTCGTTATCCATGGAGACAGGGTATTAAT
    ACCACTTATAAGCATGTTCTGACAGACCGTGTCTTTCGTCATTTGAAGGAATTGGGTGTC
    CAAAAACTTGATTTTATTTTGGTGACCCATACCCACAGTGACCATATTGGAAATGTTGAT
    GAATTACTGTCTACCTATCCAGTTGACCGAGTCTATCTTAAAAAATATAGTGATAATCGT
    ATTACTAATTCTGAACGTCTATGGGATAATCTGTACGGTTATGATAAGGTTTTACAGACT
    GCTTCAGAAAAAGGTGTTTCAGTTATTCAAAACATCACACAGGGAGATGCTCATTTTCAG
    TTTGGGGACATGGATATTCAACTCTATAACTATGAAAATGAAACCGATTCATCAGGTGAA
    TTAAAGAAAATTTGGGATGATAATTCCAATTCCTTGATTAGTGTGGTAAAAGTCAATGGC
    AAGAAAATTTACCTTGGGGGCGACTTAGATAATGTTCATGGAGCAGAAGACAAGTACGGT
    TCTCTCATTGGAAAAGTTGATTTGATGAAGTTTAATCATCACCATGATACCAACAAATCA
    AATACCAAGGATTTCATTAAAAATTTGAGTCCGAGTTTGATTGTTCAAACTTCGGATAGT
    CTACCTTGGAAAAATGGTGTTGATAGTGAGTATGTTAATTGGCTCAAAGAACGAGGAATT
    GAGAGAATCAACGCAGCCAGCAAAGACTATGATGCAACAGTTTTTGATATTCGACAAGAC
    GGTTTAGTAAACATTTCAACTTCCTACAAGCCGATTCCAAGTTTTCAAGCTGGTTGGCAT
    AAGAGTTCATATGGAAACTGGTGGTATCAAGCGCCTGATTCTACAGGAGAATATGCTGTC
    GGTTGGAATGAAATTAAGGGTGAATGGTATTACTTTAACCAAACGGGTATCTTATTACAG
    AATCAATGGAAAAAATGGAACAATCGTTGGTTCTATTTGACAGACTCTGGTGTTGCTGCT
    AAAAATTGGAAGAAAATCGCTGGAATCTGGTATTATTTTAACAAAGAAAACCAGATGGAA
    ATTGGTTGGATTCAAGATAAAGAGCAGTGGTATTATTTGGATGTTGATGGCTCTATGAAG
    ACAGGTTGGCTTCAATATAAGGGGCAATGGTATTACTTTGCTCCATCAGGGGAAATGAAA
    ACGGGCTGGGTAAAAGATAAAGAAGCCTGGTACTATATGGATTCTACTGGTATCATGAAG
    ACAGGTGAGATAGAAGTTGCTGGACATCATTACTATCTAGAAGAATCAGGAGCTATGAAG
    CAAGGCTGGCTTAAAAAGGCAAATGATTGGTATTTCTACAAGACAGGTGGTTCACGAGCT
    ATAGGTTGGATTAAAGACAAGGATAAATGGTACTTCTTGAAAGAAAATGGTCAATTACTT
    GTGAATGGTAAGACACCAGAAGGCTATACTGTTGATTCAAGTGGTGCCTGGTTAGTGGAT
    GTTCCGATCGAGAAATCTGCTACAATTAAAACTATAAGTCATTCAGAAATAAAAGAATCC
    AAAGAAGTAGTGAAAAAGGATCTTGAAAATAAAGAAACGAGTCAACATGAAAGTGTTACA
    AATTCTTCAACTAGTCAAGATTTGACATCCTCAACTTCACAAAGCTCTGAAACGAGTGTA
    AACAAATCGGAATCAGAACAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1884

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_RS06965 [old locus tag: SPNA45_01231 ]
  • symbol: CbpE
  • description: phosphorylcholine esterase CbpE
  • length: 627
  • theoretical pI: 5.85968
  • theoretical MW: 71946.3
  • GRAVY: -0.728708

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes DNA transformation DNA internalization-related competence protein ComEC/Rec2 (TIGR00361; HMM-score: 50.7)
    glucan-binding repeat (TIGR04035; HMM-score: 46.6)
    and 4 more
    Cellular processes Cellular processes Detoxification hydroxyacylglutathione hydrolase (TIGR03413; EC 3.1.2.6; HMM-score: 23.9)
    Genetic information processing Transcription RNA processing ribonuclease Z (TIGR02651; EC 3.1.26.11; HMM-score: 16.7)
    Genetic information processing Transcription Degradation of RNA beta-CASP ribonuclease, RNase J family (TIGR00649; EC 3.1.-.-; HMM-score: 16.2)
    arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein (TIGR03675; HMM-score: 11.9)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Choline_binding (CL0694) Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 109.3)
    Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 102.5)
    and 4 more
    Metallo-HOrase (CL0381) Lactamase_B; Metallo-beta-lactamase superfamily (PF00753; HMM-score: 40.5)
    Lactamase_B_2; Beta-lactamase superfamily domain (PF12706; HMM-score: 27.1)
    Choline_binding (CL0694) Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 24.6)
    Metallo-HOrase (CL0381) Lactamase_B_3; Beta-lactamase superfamily domain (PF13483; HMM-score: 15.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 25 aa
    • SP(Sec/SPI): 0.997632
    • TAT(Tat/SPI): 0.000347
    • LIPO(Sec/SPII): 0.001191
    • Cleavage Site: CS pos: 25-26. VQA-QE. Pr: 0.9886
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000728290 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKKLTSLALVGAFLGLSWYGNVQAQESSGNKIHFINVQEGGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWRQGINTTYKHVLTDRVFRHLKELGVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDNRITNSERLWDNLYGYDKVLQTASEKGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGSLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSLPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRQDGLVNISTSYKPIPSFQAGWHKSSYGNWWYQAPDSTGEYAVGWNEIKGEWYYFNQTGILLQNQWKKWNNRWFYLTDSGVAAKNWKKIAGIWYYFNKENQMEIGWIQDKEQWYYLDVDGSMKTGWLQYKGQWYYFAPSGEMKTGWVKDKEAWYYMDSTGIMKTGEIEVAGHHYYLEESGAMKQGWLKKANDWYFYKTGGSRAIGWIKDKDKWYFLKENGQLLVNGKTPEGYTVDSSGAWLVDVPIEKSATIKTISHSEIKESKEVVKKDLENKETSQHESVTNSSTSQDLTSSTSQSSETSVNKSESEQ

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNA45_RS06965&oldid=155199"