From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_RS10850 [old locus tag: SPNA45_01949 ]
  • pan locus tag?: PNEUPAN000716000
  • symbol: rpsD
  • pan gene symbol?: rpsD
  • synonym:
  • product: 30S ribosomal protein S4

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_RS10850 [old locus tag: SPNA45_01949 ]
  • symbol: rpsD
  • product: 30S ribosomal protein S4
  • replicon: chromosome
  • strand: -
  • coordinates: 1974000..1974611
  • length: 612
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018594 (1974000..1974611) NCBI
  • BioCyc: SPNA45_RS10850 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0083 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGTCACGTTATACAGGACCATCTTGGAAACAAGCTCGTCGCCTTGGCCTTTCACTTACA
    GGTACAGGTAAAGAATTGGCACGTCGTAACTACGTACCAGGACAACACGGACCAAACAAC
    CGTTCTAAATTGTCAGAATACGGTTTGCAATTGGCTGAAAAACAAAAACTTCGTTTCACT
    TACGGTGTAGGTGAAAAACAATTCCGTAACTTGTTCGTACAAGCTACAAAAATCAAAGGC
    GGAATCCTAGGTTTCAACTTTATGCTTCTTTTGGAACGTCGTTTGGATAACGTTGTTTAC
    CGTCTTGGTCTCGCGACTACTCGTCGTCAAGCTCGTCAATTCGTAAACCACGGTCACATC
    CTTGTTGACGGGAAACGCGTTGATATCCCATCATACCGCGTAACTCCAGGTCAAGTGATC
    TCAGTTCGTGAAAAATCATTGAAAGTTCCAGCAATCCTTGAAGCAGTAGAAGCTACTCTT
    GGACGTCCAGCATTCGTATCATTCGACGCTGAAAAGTTGGAAGGTTCATTGACTCGCTTG
    CCAGAACGCGACGAAATCAACCCAGAAATCAACGAAGCACTTGTCGTTGAATTCTACAAC
    AAAATGTTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    612

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_RS10850 [old locus tag: SPNA45_01949 ]
  • symbol: RpsD
  • description: 30S ribosomal protein S4
  • length: 203
  • theoretical pI: 10.7324
  • theoretical MW: 23028.4
  • GRAVY: -0.407389

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS4 (TIGR01017; HMM-score: 253.4)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS4 (TIGR01018; HMM-score: 58.4)
    Unknown function General TlyA family rRNA methyltransferase/putative hemolysin (TIGR00478; HMM-score: 26.2)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 11.7)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    S4 (CL0492) Ribosomal_S4; Ribosomal protein S4/S9 N-terminal domain (PF00163; HMM-score: 90.6)
    S4; S4 domain (PF01479; HMM-score: 79.5)
    and 1 more
    S4_2; S4 domain (PF13275; HMM-score: 16.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.2037
    • Cytoplasmic Membrane Score: 0.0068
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.7895
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018836
    • TAT(Tat/SPI): 0.013883
    • LIPO(Sec/SPII): 0.021066
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000092756 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSRYTGPSWKQARRLGLSLTGTGKELARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRFTYGVGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVEATLGRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNA45_RS10850&oldid=155950"