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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2023
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_RS11270 [old locus tag: SPNA45_02027 ]
- pan locus tag?: PNEUPAN003870000
- symbol: dltC
- pan gene symbol?: dltC
- synonym:
- product: D-alanine--poly(phosphoribitol) ligase subunit DltC
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_RS11270 [old locus tag: SPNA45_02027 ]
- symbol: dltC
- product: D-alanine--poly(phosphoribitol) ligase subunit DltC
- replicon: chromosome
- strand: -
- coordinates: 2063128..2063367
- length: 240
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_018594 (2063128..2063367) NCBI
- BioCyc: SPNA45_RS11270 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2003 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGGATATCAAATCAGAAGTTATCGAAATTATTGATGAGTTGTTTATGGAAGATGTTTCT
GACATGATGGATGAAGATCTTTTTGATGCAGGTGTCTTGGATAGTATGGGAACGGTTGAG
TTGATTGTGGAGATTGAGAACCGTTTTGACATTCGTGTCCCTGTAACAGAGTTTGGTCGT
GACGACTGGAATACAGCTAATAAAATCATAGCTGGTATTGTGGAGCTACAAAATGCTTAA60
120
180
240
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_RS11270 [old locus tag: SPNA45_02027 ]
- symbol: DltC
- description: D-alanine--poly(phosphoribitol) ligase subunit DltC
- length: 79
- theoretical pI: 3.54328
- theoretical MW: 8980.08
- GRAVY: 0.0582278
⊟Function[edit | edit source]
- reaction: EC 6.1.1.13? ExPASyD-alanine--poly(phosphoribitol) ligase ATP + D-alanine + poly(ribitol phosphate) = AMP + diphosphate + O-D-alanyl-poly(ribitol phosphate)
- TIGRFAM: Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan D-alanine--poly(phosphoribitol) ligase, subunit 2 (TIGR01688; EC 6.1.1.13; HMM-score: 79.7)and 2 moreFatty acid and phospholipid metabolism Biosynthesis acyl carrier protein (TIGR00517; HMM-score: 23.8)Cellular processes Toxin production and resistance peptide maturation system acyl carrier-related protein (TIGR04069; HMM-score: 18.7)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: PP-binding (CL0314) PP-binding; Phosphopantetheine attachment site (PF00550; HMM-score: 42.1)and 2 moreno clan defined PmrD; Polymyxin resistance protein PmrD (PF11183; HMM-score: 13)TPR (CL0020) CTNNBL; Catenin-beta-like, Arm-motif containing nuclear (PF08216; HMM-score: 10.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004652
- TAT(Tat/SPI): 0.000348
- LIPO(Sec/SPII): 0.000175
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000351967 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MDIKSEVIEIIDELFMEDVSDMMDEDLFDAGVLDSMGTVELIVEIENRFDIRVPVTEFGRDDWNTANKIIAGIVELQNA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2003 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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