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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 07-MAR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu15
- locus tag: SPNHU15_RS01460 [old locus tag: SPNHU15_00304 ]
- pan locus tag?: PNEUPAN000983000
- symbol: infA
- pan gene symbol?: infA
- synonym:
- product: translation initiation factor IF-1
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU15_RS01460 [old locus tag: SPNHU15_00304 ]
- symbol: infA
- product: translation initiation factor IF-1
- replicon: chromosome
- strand: +
- coordinates: 274508..274726
- length: 219
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NZ_CP020551 (274508..274726) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0215 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181GTGGCAAAAGACGATGTGATTGAAGTTGAAGGCAAAGTAGTTGATACAATGCCGAATGCA
ATGTTTACGGTTGAACTTGAAAATGGACATCAGATTTTAGCAACAGTTTCTGGTAAAATT
CGTAAAAACTATATTCGTATTTTAGCGGGAGATCGTGTTACTGTCGAAATGAGTCCATAT
GACTTGACACGTGGACGTATCACTTACCGCTTTAAATAA60
120
180
219
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU15_RS01460 [old locus tag: SPNHU15_00304 ]
- symbol: InfA
- description: translation initiation factor IF-1
- length: 72
- theoretical pI: 8.98872
- theoretical MW: 8202.47
- GRAVY: -0.241667
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Translation factors translation initiation factor IF-1 (TIGR00008; HMM-score: 126.8)and 1 moreProtein synthesis Translation factors translation initiation factor eIF-1A (TIGR00523; HMM-score: 18.7)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: OB (CL0021) eIF-1a; Translation initiation factor 1A / IF-1 (PF01176; HMM-score: 94.3)and 4 moreRsgA_N; RsgA N-terminal domain (PF16745; HMM-score: 17.4)S1; S1 RNA binding domain (PF00575; HMM-score: 16.6)TOBE_2; TOBE domain (PF08402; HMM-score: 13)no clan defined PRE_C2HC; Associated with zinc fingers (PF07530; HMM-score: 12.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 10
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003286
- TAT(Tat/SPI): 0.000374
- LIPO(Sec/SPII): 0.000402
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001029883 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAKDDVIEVEGKVVDTMPNAMFTVELENGHQILATVSGKIRKNYIRILAGDRVTVEMSPYDLTRGRITYRFK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0215 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.