Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 07-MAR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu15
- locus tag: SPNHU15_RS11125 [old locus tag: SPNHU15_00784 ]
- pan locus tag?: PNEUPAN001671000
- symbol: SPNHU15_RS11125
- pan gene symbol?: —
- synonym:
- product: cytidine deaminase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU15_RS11125 [old locus tag: SPNHU15_00784 ]
- symbol: SPNHU15_RS11125
- product: cytidine deaminase
- replicon: chromosome
- strand: +
- coordinates: 747273..747401
- length: 129
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP020551 (747273..747401) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121ATGACTTATAAAGCAATTATATCAGAGGCTATTAAATCAATGGCCAAAGCTTATGCTCCT
TATTCTTATTTTAAGGTTGGAGCTGCGTTAGAAACTGAAGATAAAAATTTTTTCCTGGAT
GTAATATAG60
120
129
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU15_RS11125 [old locus tag: SPNHU15_00784 ]
- symbol: SPNHU15_RS11125
- description: cytidine deaminase
- length: 42
- theoretical pI: 6.65006
- theoretical MW: 4739.49
- GRAVY: 0.17381
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides cytidine deaminase (TIGR01354; EC 3.5.4.5; HMM-score: 34.1)and 1 morePurines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides cytidine deaminase (TIGR01355; EC 3.5.4.5; HMM-score: 14.6)
- TheSEED:
- PFAM: CDA (CL0109) dCMP_cyt_deam_2; Cytidine and deoxycytidylate deaminase zinc-binding region (PF08211; HMM-score: 21.6)and 1 moredCMP_cyt_deam_1; Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383; HMM-score: 14.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.887
- Cytoplasmic Membrane Score: 0.0095
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.1033
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.054042
- TAT(Tat/SPI): 0.004967
- LIPO(Sec/SPII): 0.01442
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001842076 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTYKAIISEAIKSMAKAYAPYSYFKVGAALETEDKNFFLDVI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]