Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-APR-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu17
- locus tag: SPNHU17_00343 [new locus tag: SPNHU17_RS01590 ]
- pan locus tag?: PNEUPAN001006000
- symbol: rpsL
- pan gene symbol?: rpsL
- synonym:
- product: ribosomal protein S12
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU17_00343 [new locus tag: SPNHU17_RS01590 ]
- symbol: rpsL
- product: ribosomal protein S12
- replicon: chromosome
- strand: +
- coordinates: 296062..296475
- length: 414
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP020549 (296062..296475) NCBI
- BioCyc: see SPNHU17_RS01590
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0251 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGCCTACAATTAACCAATTGGTTCGCAAACCGCGTAAATCAAAAGTAGAAAAACCTAAA
TCACCAGCTTTGAACGTTGGTTACAACAGTCATAAAAAAGTTCAAACAAACGTTTCTTCA
CCACAAAAACGTGGTGTTGCAACTCGTGTTGGAACAATGACACCTAGAAAACCTAACTCA
GCCCTTCGTAAATTTGCTCGTGTACGTTTGAGCAACCTTATCGAAGTTACTGCCTACATC
CCAGGTATCGGACACAACTTGCAAGAGCACAGCGTGGTTCTTCTTCGTGGTGGACGTGTA
AAAGACCTTCCAGGGGTACGTTACCATATCGTCCGTGGTGCACTTGATACTGCAGGTGTT
AACGATCGTAAACAAGGCCGTTCTAAATACGGTACTAAACGTCCAAAAGCATAA60
120
180
240
300
360
414
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU17_00343 [new locus tag: SPNHU17_RS01590 ]
- symbol: RpsL
- description: ribosomal protein S12
- length: 137
- theoretical pI: 12.1551
- theoretical MW: 15181.6
- GRAVY: -0.727007
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS12 (TIGR00981; HMM-score: 217.2)and 1 moreProtein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS12 (TIGR00982; HMM-score: 37.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: OB (CL0021) Ribosom_S12_S23; Ribosomal protein S12/S23 (PF00164; HMM-score: 121.3)and 1 moreno clan defined Ribosomal_S12; Ribosomal protein S12 (PF17487; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.622
- Cytoplasmic Membrane Score: 0.0805
- Cell wall & surface Score: 0.0029
- Extracellular Score: 0.2946
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.018909
- TAT(Tat/SPI): 0.010515
- LIPO(Sec/SPII): 0.00436
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ARD33959 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MPTINQLVRKPRKSKVEKPKSPALNVGYNSHKKVQTNVSSPQKRGVATRVGTMTPRKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGVNDRKQGRSKYGTKRPKA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0251 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.