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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-APR-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu17
- locus tag: SPNHU17_01856 [new locus tag: SPNHU17_RS08685 ]
- pan locus tag?: PNEUPAN003334000
- symbol: trpC
- pan gene symbol?: trpC
- synonym:
- product: indole-3-glycerol phosphate synthase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU17_01856 [new locus tag: SPNHU17_RS08685 ]
- symbol: trpC
- product: indole-3-glycerol phosphate synthase
- replicon: chromosome
- strand: -
- coordinates: 1725624..1726391
- length: 768
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP020549 (1725624..1726391) NCBI
- BioCyc: see SPNHU17_RS08685
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1599 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGAGTCAGGAATTTTTAGCACGAATCTTAGAGCAGAAGGCGCGTGAGGTGGAGCAGATG
AAGCTGGAGCAAATCCAGCCTCTGCGCCAGACCTATCGCTTGGCAGAATTTTTGAAGAAT
CATCAGGACCGCTTGCAGGTAATCGCTGAGGTCAAGAAAGCTAGCCCTAGTTTGGGAGAT
ATCAATCTCGATGTGGATATTGTGCAACAGGCCCAGACTTATGAAGAAAACGGAGCAGTG
ATGATTTCGGTGTTGACAGATGAAGTTTTCTTTAAAGGACATTTGGATTATCTACGGGAG
ATTTCCAGTCAGGTAGAGATTCCGACGCTCAACAAGGACTTTATCATCGATGAAAAGCAA
ATCATCCGCGCTCGCAATGCAGGTGCGACAGTCATCTTGCTCATTGTGGCAGCCTTGGCA
GAAGAACGTCTTAAGGAACTTTACGACTACGCGACAGTGCTTGGTCTGGAAGTCTTGGTG
GAAACTCACAATCTAGCTGAACTAGAAGTGGCTCACAGACTTGGTGCCCAGATTATCGGG
GTCAATAACCGCAACTTGACCACCTTTGAGGTCGACTTGCAGACCAGTGTAGACTTGGCT
AAACATTTCAAAGATGATTGCTTGTACATTTCTGAATCTGCTATTTTCACAAGGCAGGAT
GCGGAACGACTAGCCCCATACTTTAACGGAATTTTGGTAGGGACAGCTCTTATGCAGGCA
GAAAATGTGGTCCAGAGAATCAAGGAGTTGCAGATTGACAAAGGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU17_01856 [new locus tag: SPNHU17_RS08685 ]
- symbol: TrpC
- description: indole-3-glycerol phosphate synthase
- length: 255
- theoretical pI: 4.63463
- theoretical MW: 28965
- GRAVY: -0.112941
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: TIM_barrel (CL0036) IGPS; Indole-3-glycerol phosphate synthase (PF00218; HMM-score: 293.5)and 1 moreno clan defined DUF5390; Family of unknown function (DUF5390) (PF17365; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9997
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0002
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00123
- TAT(Tat/SPI): 0.000262
- LIPO(Sec/SPII): 0.000181
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ARD35401 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSQEFLARILEQKAREVEQMKLEQIQPLRQTYRLAEFLKNHQDRLQVIAEVKKASPSLGDINLDVDIVQQAQTYEENGAVMISVLTDEVFFKGHLDYLREISSQVEIPTLNKDFIIDEKQIIRARNAGATVILLIVAALAEERLKELYDYATVLGLEVLVETHNLAELEVAHRLGAQIIGVNNRNLTTFEVDLQTSVDLAKHFKDDCLYISESAIFTRQDAERLAPYFNGILVGTALMQAENVVQRIKELQIDKG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1599 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]