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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 07-MAR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu17
  • locus tag: SPNHU17_RS00280 [old locus tag: SPNHU17_00055 ]
  • pan locus tag?: PNEUPAN000463000
  • symbol: SPNHU17_RS00280
  • pan gene symbol?: —
  • synonym:
  • product: phage tail spike protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU17_RS00280 [old locus tag: SPNHU17_00055 ]
  • symbol: SPNHU17_RS00280
  • product: phage tail spike protein
  • replicon: chromosome
  • strand: +
  • coordinates: 45312..>46643
  • length: 1332
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP020549 (45312..>46643) NCBI
  • BioCyc: SPNHU17_RS00280 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    TTGCTTTATCTACTTAATAAAGATGTGAGAACCGTTCGGTGGAACGGGGAGCCACTTCAT
    GAAGCGACTTCGGCGATTGTTAAAGAGACCATGAATGGCGATTTCACCTTAACTGTGAAA
    TATCCCATTTCCGACTCTGGTATTTATCAGCTCATCCAAGAAGATATGTTGATAAAAGCG
    CCGACTCCTGTTCTTGGTGCGCAGCTATTTCGCATTAAGAAACCTGTTGAATACAATGAT
    CATCTGGAAATCACAGCCTATCACATTTCAGACGATGTGATGCAACGTTCTATCACACCA
    GTAAGTGTGACTAGTCAGAGCTGTGGCATGACTCTTTCTCGCATGGTTCAAAACACCAAA
    ACTGCTTTGGGAGATTTTTCTTTCAATAGCGATATCCAGGACCGTAGGACCTTCAATACG
    ACTGAAACAGAAACCCTATACTCTATATTGCTGGACGGTAAGCACAGCATTGTTGGTACA
    TGGGAAGGCGAGCTGGTTCGTGATAACTTTGCGATGACTGTCAAGAAGAGTCGTGGGGAG
    AATCGTGGTGTTGTTATTACAACACATAAGAATCTGAAGGACTACCAACGAACCAAAAAC
    AGTCAAAATGTTGTTACAAGGATTCATGCTCGATCCACATTTAAGCCTGAAGGTGCTGAA
    AAGGAAACAACTATCAGAGTGACTGTTGATAGTCCTCTTATTAATTCTTATCCTTACATA
    AACGAAAAAGAGTATGAGAACAACAACGCAAAATCCGTTGAAGAGTTGCAGAAGTGGGCA
    CAGGCTAAGTTCTCAAATGAGGGCATTGACAAGATCTCTGACGCTATCAAGATTGAAGCT
    TATGAACTTGATGGGCAAGTTGTTCACATGGGTGATACGGTCAATCTCAAGAGCTGGAAA
    CATAATGTTGATGTATTTAAGAAAGCTATTGCTTATGAGTTCGATGCCTTAAAAGAAGAA
    TATATCTCTCTGATTCTCGATGATAAGGCAGGAGCTGGTGGTTCTAGAACATCTGGTGGC
    TTATCTAGCGCAGCGTATGCCATTCTTGGAGTAACAGAATCTGCACAAGAAGTTGCCCTT
    GAAAAGGCTCTTCAAAATGCTGACTTAGACTTTGATCATAAGGCTGGATTGCTTAGACAG
    GAAATTTCTGACGGCATCGAACTTGCCAAGGCCAAGGCGGAAGAAGTCAAGCAAGAACTG
    TCTGACACTATCAATCAGCGCTTTAATAGCTTTGACAACGGGCCATTGAAAGAAGCTAAG
    CGCAAGGCTGAGGAAGCTTTGCGAAATGCTGGCGCAAGTAGTTCTCTTGCTCAGGAATCC
    AAGCGGATTGGG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1332

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU17_RS00280 [old locus tag: SPNHU17_00055 ]
  • symbol: SPNHU17_RS00280
  • description: phage tail spike protein
  • length: 444
  • theoretical pI: 5.72122
  • theoretical MW: 49570.4
  • GRAVY: -0.520946

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage minor structural protein, N-terminal region (TIGR01665; HMM-score: 111.8)
    and 1 more
    Plasmodium yoelii subtelomeric family PYST-A (TIGR01599; HMM-score: 13.7)
  • TheSEED:
  • PFAM:
    Phage_barrel (CL0504) Prophage_tailD1; Prophage endopeptidase tail N-terminal domain (PF18994; HMM-score: 26.3)
    Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 24.6)
    and 1 more
    B_GA (CL0598) GA-like; GA-like domain (PF17573; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0876
    • Cytoplasmic Membrane Score: 0.0262
    • Cell wall & surface Score: 0.2225
    • Extracellular Score: 0.6637
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003778
    • TAT(Tat/SPI): 0.000206
    • LIPO(Sec/SPII): 0.000589
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_208912181 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLYLLNKDVRTVRWNGEPLHEATSAIVKETMNGDFTLTVKYPISDSGIYQLIQEDMLIKAPTPVLGAQLFRIKKPVEYNDHLEITAYHISDDVMQRSITPVSVTSQSCGMTLSRMVQNTKTALGDFSFNSDIQDRRTFNTTETETLYSILLDGKHSIVGTWEGELVRDNFAMTVKKSRGENRGVVITTHKNLKDYQRTKNSQNVVTRIHARSTFKPEGAEKETTIRVTVDSPLINSYPYINEKEYENNNAKSVEELQKWAQAKFSNEGIDKISDAIKIEAYELDGQVVHMGDTVNLKSWKHNVDVFKKAIAYEFDALKEEYISLILDDKAGAGGSRTSGGLSSAAYAILGVTESAQEVALEKALQNADLDFDHKAGLLRQEISDGIELAKAKAEEVKQELSDTINQRFNSFDNGPLKEAKRKAEEALRNAGASSSLAQESKRIG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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