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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 07-MAR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu17
- locus tag: SPNHU17_RS00595
- pan locus tag?: PNEUPAN000698000
- symbol: SPNHU17_RS00595
- pan gene symbol?: glpE_1
- synonym:
- product: rhodanese-like domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU17_RS00595
- symbol: SPNHU17_RS00595
- product: rhodanese-like domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 110696..110929
- length: 234
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP020549 (110696..110929) NCBI
- BioCyc: SPNHU17_RS00595 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2089 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATCGATGTCCGTGAAGCACATGAATTCCAAGCAGGACATGCACCAGGTGCCAAAAATCTT
CCATTAAGTACCTTAGAGCAAGGCTACAAAGAACTCAAACCTGACCATGAATACTATGTT
ATTTGTCAAGGAGGAGTCCGCTCTGCATCTACCTGCCAATTTCTCAGCTCCCAAGGCCTC
ACCGTTACCAACGTAGAAGGTGGTATGAATACTTGGCCCGGTCAAGTAGAATAA60
120
180
234
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU17_RS00595
- symbol: SPNHU17_RS00595
- description: rhodanese-like domain-containing protein
- length: 77
- theoretical pI: 4.94566
- theoretical MW: 8395.28
- GRAVY: -0.515584
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 35.1)and 3 morephage shock operon rhodanese PspE (TIGR02981; EC 2.8.1.1; HMM-score: 24.1)thiazole biosynthesis domain (TIGR04271; HMM-score: 22.9)Protein synthesis tRNA and rRNA base modification selenouridine synthase, SelU N-terminal-like subunit (TIGR04568; HMM-score: 11.7)
- TheSEED:
- PFAM: Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 44)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9673
- Cytoplasmic Membrane Score: 0.0026
- Cell wall & surface Score: 0.0004
- Extracellular Score: 0.0296
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.037201
- TAT(Tat/SPI): 0.003065
- LIPO(Sec/SPII): 0.002892
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_224782640 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MDVREAHEFQAGHAPGAKNLPLSTLEQGYKELKPDHEYYVICQGGVRSASTCQFLSSQGLTVTNVEGGMNTWPGQVE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2089 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]