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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 04-FEB-2016
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae INV200
- locus tag: SPNINV200_00970 [new locus tag: SPNINV200_RS00535 ]
- pan locus tag?: PNEUPAN000752000
- symbol: SPNINV200_00970
- pan gene symbol?: lytN
- synonym:
- product: putative peptidoglycan-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNINV200_00970 [new locus tag: SPNINV200_RS00535 ]
- symbol: SPNINV200_00970
- product: putative peptidoglycan-binding protein
- replicon: chromosome
- strand: +
- coordinates: 103645..104232
- length: 588
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312029 (103645..104232) NCBI
- BioCyc: see SPNINV200_RS00535
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0104 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGAAATCAATAACTAAAAAGATTAAAGCAACTCTTGCAGGAGTAGCTGCCTTGTTTGCA
GTATTTGCTCCATCATTTGTATCTGCTCAAGAATCATCAACTTACACTGTTAAAGAAGGT
GATACACTTTCAGAAATCGCTGAAACTCACAACACAACAGTTGAAAAATTGGCAGAAAAC
AACCACATTGATAACATTCATTTGATTTATGTTGATCAAGAGTTGGTTATCGATGGCCCT
GTAGCGCCTGTTGCAACACCAGCGCCAGCTACTTATGCGGCACCAGCCGCTCAAGATGAA
ACTGTTTCAGCTCCAGTAGCAGAAACTCCAGTAGTAAGTGAAACAGTTGTTTCAACTGTA
AGCGGATCTGAAGCAGAAGCCAAAGAATGGATCGCTCAAAAAGAATCAGGTGGTAGCTAT
ACAGCTACAAATGGACGTTATATCGGACGTTACCAATTAACAGATTCATACCTGAACGGT
GACTACTCAGCTGAAAACCAAGAACGTGTAGCAGATGCCTACGTTGCAGGACGTTACGGT
TCATGGACTGCTGCTAAAAACTTCTGGCTTAACAATGGCTGGTATTAA60
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588
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNINV200_00970 [new locus tag: SPNINV200_RS00535 ]
- symbol: SPNINV200_00970
- description: putative peptidoglycan-binding protein
- length: 195
- theoretical pI: 4.34869
- theoretical MW: 20920.9
- GRAVY: -0.246154
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0004
- Cytoplasmic Membrane Score: 0.0228
- Cell wall & surface Score: 0.2962
- Extracellular Score: 0.6806
- SignalP: Signal peptide SP(Sec/SPI) length 29 aa
- SP(Sec/SPI): 0.994136
- TAT(Tat/SPI): 0.002531
- LIPO(Sec/SPII): 0.002177
- Cleavage Site: CS pos: 29-30. VSA-QE. Pr: 0.9728
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CBW33731 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKSITKKIKATLAGVAALFAVFAPSFVSAQESSTYTVKEGDTLSEIAETHNTTVEKLAENNHIDNIHLIYVDQELVIDGPVAPVATPAPATYAAPAAQDETVSAPVAETPVVSETVVSTVSGSEAEAKEWIAQKESGGSYTATNGRYIGRYQLTDSYLNGDYSAENQERVADAYVAGRYGSWTAAKNFWLNNGWY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0104 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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