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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC08140 [new locus tag: SPNOXC_RS04405 ]
  • pan locus tag?: PNEUPAN001885000
  • symbol: SPNOXC08140
  • pan gene symbol?: tex
  • synonym:
  • product: putative transcription accessory protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC08140 [new locus tag: SPNOXC_RS04405 ]
  • symbol: SPNOXC08140
  • product: putative transcription accessory protein
  • replicon: chromosome
  • strand: +
  • coordinates: 827492..829621
  • length: 2130
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    ATGGATAAAAAATATGAAAAAATCTCTCAGGATTTGGGAGTGACGTTAAAGCAAATTGAT
    ACCGTTCTAAGTTTGACAGCTGAAGGGGCGACTATTCCCTTTATCGCGCGTTATCGCAAG
    GACATGACTGGTAGTCTGGATGAGGTGGCGATTAAGGCTATTATTGATTTGGATAAAAGT
    CTGACAAATCTCAATGACCGTAAGGAAGCTGTCTTAGCTAAGATTCAAGAACAAGGTAAG
    TTGACCAAGGAATTGGAAGAAGCTATCTTAGTTGCCGAAAAATTAGCAGACGTTGAAGAA
    CTCTATCTTCCTTATAAGGAAAAGCGTCGTACCAAGGCAACCATTGCCCGTGAAGCTGGA
    CTCTTTCCTCTTGCTCGCTTGATTTTGCAGAATATAGTTGACTTAGAGAAAGAAGCTGAA
    AAGTTCGTCTGTGAAGGATTTGCGACTGGCAAGGAAGCCTTGACCGGTGCAGTTGATATT
    TTGGTCGAAGCCTTATCGGAAGATGTGACCTTGCGTTCTATGACTTATCAGGAAGTGCTG
    AGACACTCTAAACTCACTTCTCAAGCCAAGGATGAAAGTCTTGATGAAAAGCAGGTTTTT
    CAGATTTATTATGATTTTTCAGAGACAGTTGGAACTATGCAAGGCTATCGTACCTTGGCT
    CTCAATCGTGGGGAGAAACTTGGTGTCTTGAAGATCGGTTTTGAACATGCGACGGACCGT
    ATTCTTGCCTTCTTTGCTACTCGTTTCAAGGTGAAAAATGCTTATATTGATGAAGTTGTT
    CAGCAATCCGTTAAGAAAAAGGTCTTGCCTGCTATTGAGCGTCGTATTCGGACAGAATTA
    ACTGAGAAAGCTGAAGAGGGAGCTATCCAACTTTTTTCTGACAATCTGCGCAATCTCCTC
    TTGGTTGCTCCACTGAAAGGGCGCGTGGTTCTTGGGTTTGACCCAGCCTTTCGTACAGGT
    GCCAAGCTAGCTGTCGTGGATGCAACAGGAAAAATGCTGACAACTCAGGTTATTTATCCT
    GTTAAACCAGCATCAGCTCGTCAAATCGAAGAAGCCAAGAAAGATTTAGCAGATTTAATT
    GGTCAATACGGTGTAGAGATTATTGCCATTGGAAATGGAACGGCCAGTCGTGAAAGTGAA
    GCTTTTGTAGCGGAAGTTCTGAAAGATTTCCCTGAAGTCAGCTATGTTATCGTTAATGAA
    AGTGGTGCTTCTGTCTATTCTGCCAGCGAACTTGCTCGTCAGGAGTTTCCAGACTTGACC
    GTTGAAAAACGCTCTGCCATTTCTATCGCCCGTCGTTTGCAAGATCCTCTTGCGGAATTG
    GTCAAAATCGATCCTAAGTCAATTGGTGTCGGTCAATACCAACACGATGTTAGTCAGAAG
    AAACTATCTGAGAGTCTGGACTTTGTTGTCGATACAGTGGTTAACCAAGTTGGTGTCAAT
    GTCAATACAGCTAGCCCAGCTCTTCTTTCACACGTAGCTGGACTCAATAAAACCATTTCT
    GAAAATATCGTCAAATACCGTGAGGAAGAGGGAAAAATCACTTCACGCTCCCAAATCAAG
    AAAGTTCCTCGTTTGGGGGCCAAGGCTTTTGAACAGGCTGCTGGTTTCCTCCGTATCCCT
    GAAAGTAGCAATATCCTTGATAATACAGGAGTTCACCCAGAAAATTACGCTGCCGTTAAG
    GAACTCTTCAAATGCTTGGACATTAAGGATCTGAATGAAGAGGCCCAAAGCAAACTCAAG
    TCGCTTTCAGTCAAGGAAATGGCGCAAGAGTTAGACCTTGGTCCAGAAACTCTTAAAGAT
    ATCATTGCAGATCTTCTCAAACCAGGTCGAGATTTCCGTGATTCCTTTGATGCTCCAGTT
    CTCCGTCAAGATGTCCTAGATATCAAGGACTTAGTGGTTGGACAAAAGCTAGAAGGAGTG
    GTGCGTAACGTTGTTGATTTCGGTGCTTTTGTTGATATCGGAATTCATGAGGACGGTCTC
    ATCCATATTTCCCATATGAGTCGCAAGTTTATCAAACACCCTAGTCAAGTGGTGGCAGTT
    GGAGATTTGGTGAGCGTTTGGGTTAAGAAAATTGATACTGAACGTGAAAAAGTTAATCTG
    TCTCTCCTAGCTCCAAATGAAACTGACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2130

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC08140 [new locus tag: SPNOXC_RS04405 ]
  • symbol: SPNOXC08140
  • description: putative transcription accessory protein
  • length: 709
  • theoretical pI: 5.38231
  • theoretical MW: 78646.7
  • GRAVY: -0.177856

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bS1 (TIGR00717; HMM-score: 59.6)
    and 7 more
    Genetic information processing Transcription Degradation of RNA polyribonucleotide nucleotidyltransferase (TIGR03591; EC 2.7.7.8; HMM-score: 45.6)
    Cellular processes Cellular processes DNA transformation competence protein ComEA helix-hairpin-helix repeat region (TIGR00426; HMM-score: 33.1)
    Cellular processes Cellular processes DNA transformation comEA protein (TIGR01259; HMM-score: 32.6)
    guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase (TIGR02696; EC 2.7.-.-,2.7.7.8; HMM-score: 25)
    Genetic information processing Transcription Degradation of RNA ribonuclease R (TIGR02063; EC 3.1.-.-; HMM-score: 24.7)
    Genetic information processing Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase (TIGR00448; EC 2.7.7.6; HMM-score: 17.8)
    Genetic information processing Transcription Degradation of RNA VacB and RNase II family 3'-5' exoribonucleases (TIGR00358; EC 3.1.13.1; HMM-score: 12.1)
  • TheSEED  :
    • Transcription accessory protein (S1 RNA-binding domain)
  • PFAM:
    no clan defined Tex_N; Tex-like protein N-terminal domain (PF09371; HMM-score: 198.3)
    YqgF (CL0580) Tex_YqgF; Tex protein YqgF-like domain (PF16921; HMM-score: 182.2)
    and 9 more
    HHH (CL0198) HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 91.3)
    HHH_9; HHH domain (PF17674; HMM-score: 69.7)
    OB (CL0021) S1; S1 RNA binding domain (PF00575; HMM-score: 56.4)
    HHH (CL0198) HHH_7; Helix-hairpin-helix motif (PF14635; HMM-score: 31.4)
    YqgF (CL0580) YqgF; Holliday-junction resolvase-like of SPT6 (PF14639; HMM-score: 29.3)
    HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 16.2)
    HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 14.3)
    no clan defined ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain (PF00306; HMM-score: 13.7)
    HTH (CL0123) FeoC; FeoC like transcriptional regulator (PF09012; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9629
    • Cytoplasmic Membrane Score: 0.0053
    • Cell wall & surface Score: 0.0059
    • Extracellular Score: 0.026
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004981
    • TAT(Tat/SPI): 0.000565
    • LIPO(Sec/SPII): 0.001103
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW32471 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDRILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVNVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYAAVKELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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