Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 05-APR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae OXC141
- locus tag: SPNOXC_RS01135 [old locus tags: SPNOXC02020 SPNOXC_02020 ]
- pan locus tag?: PNEUPAN000879000
- symbol: SPNOXC_RS01135
- pan gene symbol?: —
- synonym:
- product: DUF3021 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNOXC_RS01135 [old locus tags: SPNOXC02020 SPNOXC_02020 ]
- symbol: SPNOXC_RS01135
- product: DUF3021 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 198961..199419
- length: 459
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_017592 (198961..199419) NCBI
- BioCyc: SPNOXC_RS01135 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0162 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAAAAAACAAGTATTTCACGATGCAGCTGCCGGTGTTCTTATCGGCCTCATCCTCTCC
ATCCTCTTTTCACTCATTTATGCACCAAATACCTACGCACCACTAAATCCCTACTCTCTC
ATCGGCCAAGTGATGGATCAGCATCAGGTTCACGGTGCCCTGGTCTTGCTCTACTGCACA
CTTATCTGGGCAGCCATCGGTATGCTCTTCAACTTTGGCAACCGCTTATTCAGCCGTGAC
TGGAGCATGCTTCGTGCCACTCTGACTCATTTCTTCCTTATGCTGGCTGGCTTTGTCCCA
CTAGCAACTCTTGCTGGTTGGTTCCCTTTCCACTGGATTTTCTACCTCCAGCTCATTATC
GAGTTTGCGATTGTCTATCTCATCATCTGGGCTATTCTCTATAAAAGAGAGGCTAAAAAA
GTAGATCACATCAATCAACTCTTGGAGCATAGAAAATAG60
120
180
240
300
360
420
459
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNOXC_RS01135 [old locus tags: SPNOXC02020 SPNOXC_02020 ]
- symbol: SPNOXC_RS01135
- description: DUF3021 domain-containing protein
- length: 152
- theoretical pI: 9.63028
- theoretical MW: 17581.9
- GRAVY: 0.691447
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPNOXC02020
- PFAM: no clan defined DUF3021; Protein of unknown function (DUF3021) (PF11457; HMM-score: 109.2)and 3 moreUbiquitin (CL0072) APG12; Ubiquitin-like autophagy protein Apg12 (PF04110; HMM-score: 14.5)no clan defined DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 12.1)Phage_holin_3_6; Putative Actinobacterial Holin-X, holin superfamily III (PF07332; HMM-score: 9.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0008
- Cytoplasmic Membrane Score: 0.9987
- Cell wall & surface Score: 0
- Extracellular Score: 0.0005
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.073759
- TAT(Tat/SPI): 0.005428
- LIPO(Sec/SPII): 0.029265
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000745054 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKKQVFHDAAAGVLIGLILSILFSLIYAPNTYAPLNPYSLIGQVMDQHQVHGALVLLYCTLIWAAIGMLFNFGNRLFSRDWSMLRATLTHFFLMLAGFVPLATLAGWFPFHWIFYLQLIIEFAIVYLIIWAILYKREAKKVDHINQLLEHRK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0162 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]