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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 20-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae OXC141
- locus tag: SPNOXC_RS08075 [old locus tags: SPNOXC14920 SPNOXC_14920 ]
- pan locus tag?: PNEUPAN003100000
- symbol: SPNOXC_RS08075
- pan gene symbol?: alr
- synonym:
- product: alanine racemase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNOXC_RS08075 [old locus tags: SPNOXC14920 SPNOXC_14920 ]
- symbol: SPNOXC_RS08075
- product: alanine racemase
- replicon: chromosome
- strand: -
- coordinates: 1519828..1520931
- length: 1104
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_017592 (1519828..1520931) NCBI
- BioCyc: SPNOXC_RS08075 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1508 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1081ATGAAAGCTAGTCCACATAGACCAACCAAGGTTCTGATTCATCTGGGAGCTATTCGACAA
AATATTCAGCAAATGGGGGCTCATATCCCTCAAGGAACGCTCAAGTGGGCTGTGGTCAAG
GCCAATGCTTATGGCCATGGAGCTGTTGCCGTTGCCAAGGCAATTCAAGATGATGTTGAT
GGCTTTTGCGTTTCCAATATCGATGAAGCCATTGAACTCAGACAAGCTGGACTCAGCAAG
CCAATCCTCATTTTAGGAGTTTCTGAAATCGAAGCTGTTGCTCTAGCTAAAGAATATGAC
TTCACCTTGACAGTGGCTGGACTGGAGTGGATTCAAGCACTCTTAGATAAGGAAGTGGAC
CTAACTGGATTGACAGTCCACCTCAAGATTGATTCAGGGATGGGACGGATTGGTTTTAGA
GAGGCCAGTGAGGTTGAGCAGGCTCAAGATTTGCTCCAACAACACGGTGTTCGTGTTGAA
GGAATCTTTACCCACTTTGCTACTGCTGATGAGGAATCAGATGACTATTTTAATGCCCAG
TTAGAACGGTTTAAAACTATTTTAGCTAGTATGAAGGAAGTTCCAGAGCTGGTTCATGCT
AGCAATTCTGCAACGACTCTTTGGCATGTAGAGACTATTTTCAATGCGGTTCGTATGGGA
GATGCCATGTATGGCCTCAATCCAAGTGGAGCGGTCTTGAATTTGCCTTATGATTTGATA
CCGGCCTTGACCTTGGAGTCTGCTCTGGTTCATGTCAAGACAGTTCCAGCTGGAGCTTGC
ATGGGCTATGGAGCAACTTATCAAGCGGATAGCGAGCAAGTCATCGCGACCGTGCCAATC
GGGTATGCAGATGGATGGACAAGAGACATGCAAAATTTCTCTGTCTTGGTAGATGGCCAA
GCTTGCCCAATTGTCGGCAGGGTTTCGATGGACCAAATCACTATTCGATTGCCTAAGCTT
TATCCGCTAGGAACCAAGGTAACCTTGATTGGCTCCAATGGGGATAAGGAAATCACTGCA
ACTCAGGTAGCGACCTACCGCGTAACCATTAACTATGAGGTGGTTTGCCTCCTCAGCGAC
CGTATTCCGAGAGAATATTATTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNOXC_RS08075 [old locus tags: SPNOXC14920 SPNOXC_14920 ]
- symbol: SPNOXC_RS08075
- description: alanine racemase
- length: 367
- theoretical pI: 4.97155
- theoretical MW: 40010.6
- GRAVY: 0.0689373
⊟Function[edit | edit source]
- reaction: EC 5.1.1.1? ExPASyAlanine racemase L-alanine = D-alanine
- TIGRFAM: Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan alanine racemase (TIGR00492; EC 5.1.1.1; HMM-score: 363.1)
- TheSEED: see SPNOXC14920
- PFAM: TIM_barrel (CL0036) Ala_racemase_N; Alanine racemase, N-terminal domain (PF01168; HMM-score: 220.1)and 2 moreno clan defined Ala_racemase_C; Alanine racemase, C-terminal domain (PF00842; HMM-score: 139)E-set (CL0159) TIG; IPT/TIG domain (PF01833; HMM-score: 14.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.032687
- TAT(Tat/SPI): 0.007498
- LIPO(Sec/SPII): 0.001967
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000648104 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKASPHRPTKVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQDDVDGFCVSNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGLTVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERFKTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLNLPYDLIPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFSVLVDGQACPIVGRVSMDQITIRLPKLYPLGTKVTLIGSNGDKEITATQVATYRVTINYEVVCLLSDRIPREYY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1508 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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