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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NU83127
- locus tag: SPNU_1660 [new locus tag: EL277_RS08750 ]
- pan locus tag?: PNEUPAN003183000
- symbol: sstT
- pan gene symbol?: sstT
- synonym:
- product: Serine/threonine transporter SstT
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNU_1660 [new locus tag: EL277_RS08750 ]
- symbol: sstT
- product: Serine/threonine transporter SstT
- replicon: chromosome
- strand: +
- coordinates: 1652443..1653402
- length: 960
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018936 (1652443..1653402) NCBI
- BioCyc: see EL277_RS08750
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2388 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGATAGGGACTTTCGCCGCTGCTCTTGTAGCTGTACTAGCAAATTTCATCGTCCCTATT
GAAATTACCCCAAATAGTGCCAATACTGAAATTGCACCACCAGATGGGATTGGGCAGGTT
CTCAGCAACCTCTTGCTCAAACTGGTTGACAACCCAGTCAACGCCCTGCTTACTGCTAAC
TATATTAGAATCTTATCTTGGGCAGTCATTTTTGGAATCGCTATGAGAGAAGCCAGTAAA
AATAGTCAAGAATTGCTAAAAACTATCGCTGACGTGACTTCTAAAATTGTCGAATGGATC
ATCAATCTGGCTCCATTTGGAATCCTTGGTCTTGTTTTTAAAACCATTTCTGACAAGGGA
GTCGGAAGCCTTGCCAACTACGGTATTTTATTGGTTCTATTAGTAACGACTATGCTTTTT
GTTGCCCCTGTGGTCAACCCTTTGATTGCCTTCTTCTTTATGAGACGCAATCCTTACCCT
CTAGTTTGGAACTGCCTCCGTGTCAGCGGTGTGACAGCCTTTTTCACTCGTAGTTCTGCG
ACTAACATTCCTGTCAACATGAAACTCTGCCATGACCTTGGACTCAACCCAGATACCTAT
TCTGTTTCTATCCCACTCGGTTCTACTATCAATATGGCTGGAGTAGCGATTACCATTAAC
CTTTTGACCCTTGCTGCAGTTAACACTCTTGGAATTCCTGTTGACTTTGCCACAGCCTTT
GTCCTCAGTGTGGTAGCAGCTATCTCATCCTGTGATGCTTCAGGTATTGCCGGAGGTTCC
CTCCTTCTTATCCCAGTTGCTTGTAGCCTTTTCGGTATTTCTAACGATATTGCCATACAA
ATTGTTGGGGTTGGTTTTGTGATTGGTGTCATCCAAGACTCATGTGAAACAGCCCTTAAC
TCTTCTACAGATGTCCTCTTTACCGCCGTTGCCGAATACGCAGCAACCCGTAAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNU_1660 [new locus tag: EL277_RS08750 ]
- symbol: SstT
- description: Serine/threonine transporter SstT
- length: 319
- theoretical pI: 5.20577
- theoretical MW: 33558.3
- GRAVY: 0.866771
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39
- PFAM: no clan defined SDF; Sodium:dicarboxylate symporter family (PF00375; HMM-score: 176.7)and 1 moreHTH (CL0123) MerR_2; MerR HTH family regulatory protein (PF13591; HMM-score: 13)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9987
- Cell wall & surface Score: 0
- Extracellular Score: 0.0013
- SignalP: Signal peptide SP(Sec/SPI) length 27 aa
- SP(Sec/SPI): 0.630775
- TAT(Tat/SPI): 0.007768
- LIPO(Sec/SPII): 0.017807
- Cleavage Site: CS pos: 27-28. NSA-NT. Pr: 0.2610
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG35542 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIGTFAAALVAVLANFIVPIEITPNSANTEIAPPDGIGQVLSNLLLKLVDNPVNALLTANYIRILSWAVIFGIAMREASKNSQELLKTIADVTSKIVEWIINLAPFGILGLVFKTISDKGVGSLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINMAGVAITINLLTLAAVNTLGIPVDFATAFVLSVVAAISSCDASGIAGGSLLLIPVACSLFGISNDIAIQIVGVGFVIGVIQDSCETALNSSTDVLFTAVAEYAATRKK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2388 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]