From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae HU-OH
  • locus tag: SPOH_0474 [new locus tag: EL271_RS02610 ]
  • pan locus tag?: PNEUPAN001447000
  • symbol: ydaF_1
  • pan gene symbol?: ydaF_2
  • synonym:
  • product: Putative ribosomal N-acetyltransferase YdaF

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPOH_0474 [new locus tag: EL271_RS02610 ]
  • symbol: ydaF_1
  • product: Putative ribosomal N-acetyltransferase YdaF
  • replicon: chromosome
  • strand: +
  • coordinates: 473173..473733
  • length: 561
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGCAAGAACTGAGCTGTCAGATAAAATCGAAACAGAACGTCTCGTTTTACGAGTCCGT
    ACTGTGGCGGATGCTGAGGATATCCATGCCTACGCTAGTTTGCCAGAGGTCGCCTATCCA
    GCAGGTTTTCCTCCAGTCAAGACCTTGGAAGATGAGATTTATTATCTGGAGCACATTCTT
    CCGGAGCGTAATCAAAAGGAAAATCTCCCAGCAGGCTACGGGATTGTCGTCAAAGGAACG
    GATAAGATCGCTGGCTCTGTCGATTTCAACCATCGCCATGAAGATGATGTGCTGGAAATC
    GGCTATACCTTACCCCCAGACTATTGGGGGCGAGGTTATGTGCCAGAAGCTGCGCGTGCC
    TTGATTGACTTAGCCTTTAAAGATTTGGGTCTTCACAAGATTGAACTAACTTGCTTTGGA
    TATAACCTTCAAAGTCAACGAGTCGCGGAAAAGCTTGGCTTTACCCTCGAAGCTCGCATC
    CGAGACCGAAAGGATGTTCAAGGAAACCGCTGTGACAGTCTGATATATGGCTTGCTGAAG
    AGCGAGTGGGAGGTGATTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    561

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPOH_0474 [new locus tag: EL271_RS02610 ]
  • symbol: YdaF_1
  • description: Putative ribosomal N-acetyltransferase YdaF
  • length: 186
  • theoretical pI: 4.85853
  • theoretical MW: 21147.8
  • GRAVY: -0.352151

⊟Function[edit | edit source]

  • TIGRFAM:
    UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase (TIGR03585; EC 2.3.1.202; HMM-score: 18)
    and 1 more
    Cellular processes Cellular processes Toxin production and resistance aminoglycoside N(6')-acetyltransferase, AacA4 family (TIGR04431; EC 2.3.1.82; HMM-score: 11.3)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_3; Acetyltransferase (GNAT) domain (PF13302; HMM-score: 101)
    and 4 more
    Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 36.5)
    Acetyltransf_4; Acetyltransferase (GNAT) domain (PF13420; HMM-score: 18.1)
    Acetyltransf_8; Acetyltransferase (GNAT) domain (PF13523; HMM-score: 15.3)
    GNAT_acetyltran; GNAT acetyltransferase (PF12746; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9971
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0024
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00579
    • TAT(Tat/SPI): 0.001993
    • LIPO(Sec/SPII): 0.001109
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG36506 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MARTELSDKIETERLVLRVRTVADAEDIHAYASLPEVAYPAGFPPVKTLEDEIYYLEHILPERNQKENLPAGYGIVVKGTDKIAGSVDFNHRHEDDVLEIGYTLPPDYWGRGYVPEAARALIDLAFKDLGLHKIELTCFGYNLQSQRVAEKLGFTLEARIRDRKDVQGNRCDSLIYGLLKSEWEVI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPOH_0474&oldid=82127"