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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae HU-OH
- locus tag: SPOH_0483 [new locus tag: EL271_RS02645 ]
- pan locus tag?: PNEUPAN001503000
- symbol: licT_1
- pan gene symbol?: bglG
- synonym:
- product: Transcription antiterminator LicT
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPOH_0483 [new locus tag: EL271_RS02645 ]
- symbol: licT_1
- product: Transcription antiterminator LicT
- replicon: chromosome
- strand: +
- coordinates: 480777..481616
- length: 840
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018937 (480777..481616) NCBI
- BioCyc: see EL271_RS02645
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0501 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGATCATAAAACGAATACTAAACCACAATGCCGTAATTGCGCAAAGTAAAAAAGATATC
GATATTCTTCTTTTTGGAAGGGGAATAGCTTTTGGAAGAAAAATTGGAGATAAAGTAAAT
CCAATTGATATTGAGAAAAGTTTTTTTCTCAAAAATAGAGATAATATGACCCGTTTTACA
GAGATGTTTATTAACGTTCCTTTGGAGTTGGTGTACATCACCGAAAAAATAATTAATCTA
GGTAAAATAACATTAGGTAATAATTTTGATGAGATTATCTATATAAATCTAACGGATCAT
ATTTCTTCGAGTATAGAACGTTATAAAGAAGGAGTTATTATTTCGAATCCCCTACGCTGG
GAAATATCGAAATATTATAAAGAAGAATTTGAGCTTGGGAAAAGGGCTTTACAAATAATA
AAAAAAGAGTTAGGTATTGAACTTCCAATTGACGAAGCTGCATTCATAGCGCTACATTTT
GTTAATGCTAATTTAGAAAATAATTTTCAAGAGTCGTATAAAATCACTGAAATAATTATG
GGAATTGAGAAAATCATTCAAGATTTCTATTGTACTGAGTTTAACCAAGATTCTATTGAT
TATTATAGATTCATAACTCATATAAAATTATTTGCCCATCGCTTGGTTGAAAATACAACT
TATTGTGACGATGATGATGAAGACTTGTTAGCATTAATGAAAAATAAATATCCTAGAGAA
TATGAATGTGGTGAACAGGTGGCAATGTTTATACAAACTGAGTACAATTATTTGCTGACT
TCTAGTGAATTAGTTTATTTGATGGCTCATATTCGTCGCTTAACAAAAAATTTAGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPOH_0483 [new locus tag: EL271_RS02645 ]
- symbol: LicT_1
- description: Transcription antiterminator LicT
- length: 279
- theoretical pI: 5.12265
- theoretical MW: 32870.7
- GRAVY: -0.187097
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: PRD (CL0166) PRD; PRD domain (PF00874; HMM-score: 145)and 3 moreno clan defined CAT_RBD; CAT RNA binding domain (PF03123; HMM-score: 65)OB (CL0021) S1_2; S1 domain (PF13509; HMM-score: 14.1)MBB (CL0193) OpcA; Outer membrane protein OpcA (PF07239; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003446
- TAT(Tat/SPI): 0.000289
- LIPO(Sec/SPII): 0.000736
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG36515 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINLGKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHFVNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPREYECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0501 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.