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serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS01195 [old locus tag: SPP_0240 ]
  • pan locus tag?: PNEUPAN000908000
  • symbol: SPP_RS01195
  • pan gene symbol?: —
  • synonym:
  • product: DUF1129 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS01195 [old locus tag: SPP_0240 ]
  • symbol: SPP_RS01195
  • product: DUF1129 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 204016..204699
  • length: 684
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGTCTCAAATTGATCTACAAAAATTAACTAAGAAAAACCAAGAGTTTGTCCACATTGCT
    ACCCAACAATTCATCAAAGATGGGAAAACAGACGCTGAAATCCAGACTATTTTTGAGGAA
    GTCATTCCCCAAATCCTTGAGGAGCAATCTAAAGGTACAACTGCCCGTTCCCTATACGGC
    GCACCAACTCATTGGGCTCATAGCTTCACTGTCAAAGAGCAGTACGAAAAAGAGCATCCA
    AAAGAAAATGATGACCCAAAACTGATGATTATGGACTCAGCTCTTTTCATCACTAGCCTC
    TTTGCCCTTGTCAGCGCCCTCACAACCTTCTTTGCGGCAGACCAAGCTTTCGGCTATGGA
    TTGATTACTCTTCTATTAGTTGGACTGGTTGGTGGATTTGCCTTCTACTTGATGTACTAC
    TTTGTTTACCAATACTATGGATCAGATATGGATCGCAGTCAACGTCCACCTTTCTGGAAA
    TCTGTACTAGTTATCCTAGCTTCTATGTTCCTTTGGTTGCTTGTCTTCTTTGCAACAAGC
    TTCCTACCAGCTAGCCTTAACCCAGTACTGGATCCATTGCCACTAGCTATTATTGGAGCA
    GCCCTCCTAGCCCTTCGCTTCTATCTCAAGAAACGCTTGAATATCCGTAGTGCAAGTGCA
    GGACCAACACGCTATCAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    684

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS01195 [old locus tag: SPP_0240 ]
  • symbol: SPP_RS01195
  • description: DUF1129 domain-containing protein
  • length: 227
  • theoretical pI: 6.97166
  • theoretical MW: 25788.8
  • GRAVY: 0.14978

⊟Function[edit | edit source]

  • TIGRFAM:
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 14)
  • TheSEED: see SPP_0240
  • PFAM:
    Yip1 (CL0112) DUF1129; Protein of unknown function (DUF1129) (PF06570; HMM-score: 251.6)
    and 7 more
    no clan defined DUF4271; Domain of unknown function (DUF4271) (PF14093; HMM-score: 20.1)
    MASE1; MASE1 (PF05231; HMM-score: 19.6)
    DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 15.5)
    Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 10.4)
    DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 8.6)
    APC (CL0062) AA_permease_2; Amino acid permease (PF13520; HMM-score: 8.1)
    no clan defined DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006759
    • TAT(Tat/SPI): 0.000462
    • LIPO(Sec/SPII): 0.000374
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000078029 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSQIDLQKLTKKNQEFVHIATQQFIKDGKTDAEIQTIFEEVIPQILEEQSKGTTARSLYGAPTHWAHSFTVKEQYEKEHPKENDDPKLMIMDSALFITSLFALVSALTTFFAADQAFGYGLITLLLVGLVGGFAFYLMYYFVYQYYGSDMDRSQRPPFWKSVLVILASMFLWLLVFFATSFLPASLNPVLDPLPLAIIGAALLALRFYLKKRLNIRSASAGPTRYQE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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