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serotype 1
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Xen35
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gamPNI0373
serotype 1

NCBI: 15-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS01805 [old locus tag: SPP_0362 ]
  • pan locus tag?: PNEUPAN001120000
  • symbol: SPP_RS01805
  • pan gene symbol?: —
  • synonym:
  • product: alginate lyase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS01805 [old locus tag: SPP_0362 ]
  • symbol: SPP_RS01805
  • product: alginate lyase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 316248..318149
  • length: 1902
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAAAGAAGAAAGAAGACAATTTTTTGAAAGAGTCGATGGAAACCAATGTCGTGATTAT
    ATCTTGTCCCACTGTTCAAAAGACTATGAGAAAGTCAAGAGTTCCCTTGAACGCTTGATG
    GACAATCGTTTTATGTTTGATAGTCCTTGGGATATGGAGCCTTGTTCAAAAATCCATCAA
    ATCCAGCCGATGGTATGGGATCAAGTATTTGAAGATGATCCAGAATGGTCTTATATGCTC
    AATCGACAAGAATATCTCTTGCAGTTTATGATAGGGTATCTGGTAGAAGGAGATAAGGAC
    TATATTCAAAAGTGCAAGTTCTTTCTATTTGATTGGATTGAGCAGGTGAGAGAATTTTCT
    CCTCAATCCTTGATGACTAGAACCTTGGATACGGGTATTCGTTCCTTTACTTGGTTGAAA
    CTACTCTTGCTCCTCTTGAAATTTGACTTGCTAGAGGAGAAAGAACTAGAGAAAATTTTG
    GTCAGTCTAGAAAAGCAGATTGACTTTATGAAAAGCTACTATCGCGCCAAGTACACCCTT
    AGTAACTGGGGGATTTTACAAACAATTCCGATGCTTGCTATCTATCATTTCTTTTCAGAT
    AAGATGGACCTAGAAGAAGCTTACCATTTTGCTTCAGAGGAGTTGAAACAGCAAATTGAG
    ACACAGATTTTAGGAGATGGAAGCCAGTTTGAACAGTCGATTCTCTATCATGTAGAGGTT
    TATAAAGCCTTGCTGGATTTGTGTCTCTTGCTTCCAGACTTGCAAGATAGTTACCAAGAG
    TTGCTGGAAAAGATGGCGACCTATATTCAAATGATGACAGGCTTAGATGGACGGACTTTG
    GCTTTTGGTGATAGCGATTCTACAGAAACGACAGAAATGTTGAGCCTGTCTGCTGTGGTT
    TTGAACAAGGAAGACCTTCTTAACGGTCTGGATGTTAAAGTCGATTTGCTTAGCCTCTTG
    TTCCTGGGGCGAGAAAAGGTCAAGCGACTGCAGGAATTTGAAAGGAGAGCTTGGCAGCCT
    AAGTCCATGATCTTTGAAGACTCTGGACATGTCTGCATTAAGGATGAACATCGTTATCTA
    TTTTTCAAAAATGGTCCGCTAGGAAGTGCCCATAGCCATAGTGACGAGAATAGTTTTTGC
    TTACAGTATCAAGGCCAACCTATTTTCATAGATGCTGGGCGTTATTCTTATCGGGAGATA
    TATGAACGTTATCTCTTAAAGAGTGCTTGGAGTCATTCGACCTGCATTGTAGATGGGAAA
    GCTCCGGAAAGAATCACGGGATCCTGGGAATATGAATACTATCCTCACTCCCTGTTTTGT
    CACCATAAAGAAAGGGAGGGAGTGCATTATATTGAGGGGGCTTATTGGTCAGCAGAACCT
    GATTTGCCTTATCTTCACAAGAGAAAAATCCTCATGTTGGTAGAGGATGTCTGGCTCTTG
    GTAGATGACATCAGGTGTCAAGGTCAGCATGAGGCGTTGATTCAGTTTATCCTTGACAAG
    GATGTGACCTATCAAGATGGGAAAATCAATCAGTTGAGACTATGGAGTGAAGTTGATTTT
    GATTTGGAAGATACCATCATTTCTCCTAAATACAATGAGCTTGAAAGAAGTAGCAAGCTC
    ACCAAGCGCCAATTCTTTGAGAATCAGATGCTGGATTATACCATCATTGCGCATGAGAGT
    TTTGAAATCATCCGTCATTCTGTCTACCAGACAGATGATCGTGAAGTGGAAAATGCTCTG
    GCTTTTGAAGTGAAAAATGACGAAACAGACAAGCTGATTCTGTTATTAAGCGAGGATATT
    GGTGTAGGTGAAAAATTGTGCCTCGTTGACGGAACAAAAATGCGTGGAAAATGTCTAGTA
    TATGATAAAATAAATGAGAGAATGATTCGCTTGCAGTGCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1902

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS01805 [old locus tag: SPP_0362 ]
  • symbol: SPP_RS01805
  • description: alginate lyase family protein
  • length: 633
  • theoretical pI: 4.71873
  • theoretical MW: 75124.3
  • GRAVY: -0.411058

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPP_0362
  • PFAM:
    Gal_mutarotase (CL0103) Hepar_II_III; Heparinase II/III-like protein (PF07940; HMM-score: 85.2)
    Hy-ly_N (CL0372) Hepar_II_III_N; Heparinase II/III N-terminus (PF16889; HMM-score: 68.3)
    and 1 more
    Alginate_lyase; Alginate lyase (PF05426; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011824
    • TAT(Tat/SPI): 0.002735
    • LIPO(Sec/SPII): 0.004725
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000657096 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKEERRQFFERVDGNQCRDYILSHCSKDYEKVKSSLERLMDNRFMFDSPWDMEPCSKIHQIQPMVWDQVFEDDPEWSYMLNRQEYLLQFMIGYLVEGDKDYIQKCKFFLFDWIEQVREFSPQSLMTRTLDTGIRSFTWLKLLLLLLKFDLLEEKELEKILVSLEKQIDFMKSYYRAKYTLSNWGILQTIPMLAIYHFFSDKMDLEEAYHFASEELKQQIETQILGDGSQFEQSILYHVEVYKALLDLCLLLPDLQDSYQELLEKMATYIQMMTGLDGRTLAFGDSDSTETTEMLSLSAVVLNKEDLLNGLDVKVDLLSLLFLGREKVKRLQEFERRAWQPKSMIFEDSGHVCIKDEHRYLFFKNGPLGSAHSHSDENSFCLQYQGQPIFIDAGRYSYREIYERYLLKSAWSHSTCIVDGKAPERITGSWEYEYYPHSLFCHHKEREGVHYIEGAYWSAEPDLPYLHKRKILMLVEDVWLLVDDIRCQGQHEALIQFILDKDVTYQDGKINQLRLWSEVDFDLEDTIISPKYNELERSSKLTKRQFFENQMLDYTIIAHESFEIIRHSVYQTDDREVENALAFEVKNDETDKLILLLSEDIGVGEKLCLVDGTKMRGKCLVYDKINERMIRLQC

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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