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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS05820 [old locus tag: SPP_1175 ]
  • pan locus tag?: PNEUPAN002061000
  • symbol: SPP_RS05820
  • pan gene symbol?: —
  • synonym:
  • product: VirB4-like conjugal transfer ATPase, CD1110 family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS05820 [old locus tag: SPP_1175 ]
  • symbol: SPP_RS05820
  • product: VirB4-like conjugal transfer ATPase, CD1110 family
  • replicon: chromosome
  • strand: +
  • coordinates: 1091105..1093462
  • length: 2358
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012467 (1091105..1093462) NCBI
  • BioCyc: SPP_RS05820 BioCyc
  • MicrobesOnline: see SPP_1175
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    ATGAAAAGAAAATCAAATACATTAAAGAAACAAAAAACTTCAATGACTAATAAAAAGGAA
    GAAGTTAAAGGGAAAAAAGAGGAAGTGTTACCCTCAACGGCTAATACTCTTTCCTATCAA
    GCCCTGTATCAAAATGGTCTGATGCAGGTAAAAGAAGATTATTTCTCACAAAGCTATTTA
    CTTGGTGATGTCAATTACCAGACCGTTGGTTTAGAAGATAAGGGCGCAATCATTGAGAAG
    TATTCTGATTTGATTAACTCACTAGATGACCAAACCAACTTCCAATTGACTATCTTTAAT
    AAAAGATTGAATTTAGAAAAGTTTAGACAAAGTGTTTTGTATGAGGAAAAAGAAGATGGA
    TATGATACCTATCGTAAAGAATTGAATCGGATGATGAATCAGAATTTAGATAGTGGTGAA
    AATAACTTTTCGGCTGTAAAACTGATTAGCTTTGGAAGAAAGGATTCTAATCCCAAACAA
    GCCTATCGTTCCTTGTCTCAAATAGGAGAATATTTCAAGAGTGGTTTCTCAGAAATTGAT
    GCTCGATTTGAATCCTTGGCTGGAGAAGATCGTGTGAACTTGTTGGCCGACATGCTTAGA
    GGAGAACACCATCTTCCTTTTTCTTACCGTGATTTAACGAGATCTGGTCAGACAACTCGT
    CACTTCATAGCCCCTAATCTCTTGGATTTTAAAAACAAGAATTACCTACAAATCAATGAC
    CGCTTATTACAGATTGTCTATGTCAGAGACTACGGCATGGAATTAGGGGATCAGTTTATT
    CGAGACCTTATGCAAGGAGATTTGGAATTGATTGTAAGCCTTCATGCTCAAAGTTCGACC
    AAGGCAGATGCCATGAAGAAACTACGAACAAAGAAGACCTTGATGGAATCCCAAAAGATT
    GGGGAACAACAAAAACTAGCTCGTACAGGTATCTATTTGGAAAAAGTAGGTCATGTATTA
    GAAAGTAATATCGATGAAGCTGAAGAACTTTTAAAAACCATGACCGAGACAGGTGATAAA
    CTGTTTCAAACGGTCTTCTTGATTGGGATCTTTGGTCAGGATGAAGAAGAACTCAAACAA
    GCTCTAGATACGATTCAACAAGTGGCCGGCTCAAATGACCTAATGATTGATAAACTTCCA
    TATATGCAAGAAGCAGCCTTTAATAGTTTGCTGCCATTTGGTTGTGATTTTTTAGAGGGA
    GTATCACGGAGTTTATTAACATCTAATGTAGCAGTGAACTCACCTTGGACTTCAGTAGAC
    TTACAAGACCGCAGTGGGAAATATTACGGTATCAATCAAATCTCAAGCAATATTATTACT
    ATTGATCGAAGCTTATTAAATACACCGTCTGGTCTGATTTTAGGGACATCTGGAGCTGGG
    AAAGGGATGGCAACTAAGCATGAGATTATCACGACCAAAATCAAGGAATCTGGTGAAAAT
    ACTGAAATTATCATCGTGGATCCAGAAGCAGAATACAGTGTCATTGGACGAGCTTTTGGG
    GGAGAAATGATTGATATTGCGCCAGATTCCCAAACCTATCTCAATGTACTTGACTTGTCT
    GATGAAAATATGGATGAGGATCCTGTTAAGGTAAAATCAGAATTTCTTTTATCCTTTATC
    GGCAAGTTATTGGATAGGAAAATGGATGGAAGAGAAAAATCGATTATCGACCGAGTCACC
    AGACTCACCTATCAGTCATTTAAAGAGCCTTCTTTGGAAGAATGGGTCTTTGTCTTGAGT
    CAACAACCAGAAGAAGAAGCGCAGAATTTGGCACTTGATATGGAACTGTATGTCGAAGGT
    TCTCTTGATATTTTTTCTCATAAGACCAATATTCAGACAGGATCTAACTTCTTAATCTAT
    AACGTTAAAAAGTTAGGAGATGAGCTGAAACAAATCGCTCTTATGGTAGTGTTTGATCAG
    ATATGGAATCGTGTTGTTCGGAACCAAAAATTAGGGAAGAAGACCTGGATTTATTTTGAT
    GAAATGCAGCTTCTCTTATTAGATAAATATGCCAGTGATTTCTTCTTTAAATTGTGGAGT
    CGTGTCAGAAAATATGGAGCTAGTCCGACTGGGATAACTCAAAACGTCGAAACCTTATTG
    TTAGATCCAAATGGTAGACGGATTATTGCAAATAGTGAATTTATGATTCTCCTCAAGCAA
    GCAAAAAATGACCGAGAAGAACTGGTTCAACTCTTAGGCTTGTCAAAAGAACTCGAAAAA
    TACCTTGTCAATCCAGAAAAAGGGGCAGGACTGATAAAAGCTGGTTCAGTTGTCGTACCC
    TTTAAAAATAAGATTCCTCAAGGTACTCAATTGTTTGATATCATGAGTACGGATCCTGAT
    AAAATGGCTTCTAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2358

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS05820 [old locus tag: SPP_1175 ]
  • symbol: SPP_RS05820
  • description: VirB4-like conjugal transfer ATPase, CD1110 family
  • length: 785
  • theoretical pI: 5.07202
  • theoretical MW: 89379.2
  • GRAVY: -0.44051

⊟Function[edit | edit source]

  • TIGRFAM:
    type-IV secretion system protein TraC (TIGR02746; HMM-score: 89.6)
    and 3 more
    type IV secretion/conjugal transfer ATPase, VirB4 family (TIGR00929; HMM-score: 64.4)
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions conjugative transfer ATPase, PFL_4706 family (TIGR03744; HMM-score: 14.1)
    Unknown function Enzymes of unknown specificity radical SAM protein, BA_1875 family (TIGR04053; HMM-score: 10.7)
  • TheSEED: see SPP_1175
  • PFAM:
    P-loop_NTPase (CL0023) P-loop_TraG; TraG P-loop domain (PF19044; HMM-score: 36.2)
    and 2 more
    AAA_10; AAA-like domain (PF12846; HMM-score: 24.6)
    DUF87; Helicase HerA, central domain (PF01935; HMM-score: 21.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.5408
    • Cytoplasmic Membrane Score: 0.4392
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0196
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.02892
    • TAT(Tat/SPI): 0.005074
    • LIPO(Sec/SPII): 0.004748
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000824169 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKRKSNTLKKQKTSMTNKKEEVKGKKEEVLPSTANTLSYQALYQNGLMQVKEDYFSQSYLLGDVNYQTVGLEDKGAIIEKYSDLINSLDDQTNFQLTIFNKRLNLEKFRQSVLYEEKEDGYDTYRKELNRMMNQNLDSGENNFSAVKLISFGRKDSNPKQAYRSLSQIGEYFKSGFSEIDARFESLAGEDRVNLLADMLRGEHHLPFSYRDLTRSGQTTRHFIAPNLLDFKNKNYLQINDRLLQIVYVRDYGMELGDQFIRDLMQGDLELIVSLHAQSSTKADAMKKLRTKKTLMESQKIGEQQKLARTGIYLEKVGHVLESNIDEAEELLKTMTETGDKLFQTVFLIGIFGQDEEELKQALDTIQQVAGSNDLMIDKLPYMQEAAFNSLLPFGCDFLEGVSRSLLTSNVAVNSPWTSVDLQDRSGKYYGINQISSNIITIDRSLLNTPSGLILGTSGAGKGMATKHEIITTKIKESGENTEIIIVDPEAEYSVIGRAFGGEMIDIAPDSQTYLNVLDLSDENMDEDPVKVKSEFLLSFIGKLLDRKMDGREKSIIDRVTRLTYQSFKEPSLEEWVFVLSQQPEEEAQNLALDMELYVEGSLDIFSHKTNIQTGSNFLIYNVKKLGDELKQIALMVVFDQIWNRVVRNQKLGKKTWIYFDEMQLLLLDKYASDFFFKLWSRVRKYGASPTGITQNVETLLLDPNGRRIIANSEFMILLKQAKNDREELVQLLGLSKELEKYLVNPEKGAGLIKAGSVVVPFKNKIPQGTQLFDIMSTDPDKMASN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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